Non-Coding RNA Search

Ss1.1-Mixn-0015c02.5

Sequence:


               
               GCAGCGCTGAAACTCCGGGTGGGCGTCCATGGCGCTGCTTCGATGACAGGGCTGTGAGCA
GCCTGCCTTCCGCTTTCACCAGCTCCGCGTCGGAATAGCCGGTCCTTCCCCGGGGAGCTA
GTTCCTCCCCGGGCCCCTGAGCCATGCCCATCGCAGCCGCCCCGGACGAGCCAGGTGTAA
ATTAATTATTTGAAAGCATTGAACAATGGAGCCAGACATCATTCGAATGTACTCTTCATC
TCCACCACCATTAGACAATGGAGCTGAAGACGATGATGACGATGAATTTGGGGAATTTGG
TGGGTTTTCTGAAGTTAGCCCTTCTGGTGTAGGGTTTGTTGATTTTGATACCCCAGATTA
CAGTCGTCCTAAGGAAGAATTTGTACCTTCAAACCATTTTATGCCAATTCATGATTTCTC
AGAAAATGTAGATAGCCTTACAAGCTTTAAGTCCATGAAAAATGGTAATGATAAGGACAT
CACTGCTGAACTATCTTCTCCTGTGAAAGGACAGTCTGATGTTTTACTTTCTACCACCAG
CAAAGAAATAATTTCATCTAAAACTTTAGACACTTCCATTGATGGCATAGAAAATCCAAG
AGATTTAAATAAAGTGGTGGAACAGAGACAGAATGTTGGAACACCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGCTGAAACTCCGGGTGGGCGTCCATGGCGCTGCTTCGATGACAGGGCTGTGAGCA
GCCTGCCTTCCGCTTTCACCAGCTCCGCGTCGGAATAGCCGGTCCTTCCCCGGGGAGCTA
GTTCCTCCCCGGGCCCCTGAGCCATGCCCATCGCAGCCGCCCCGGACGAGCCAGGTGTAA
ATTAATTATTTGAAAGCATTGAACAATGGAGCCAGACATCATTCGAATGTACTCTTCATC
TCCACCACCATTAGACAATGGAGCTGAAGACGATGATGACGATGAATTTGGGGAATTTGG
TGGGTTTTCTGAAGTTAGCCCTTCTGGTGTAGGGTTTGTTGATTTTGATACCCCAGATTA
CAGTCGTCCTAAGGAAGAATTTGTACCTTCAAACCATTTTATGCCAATTCATGATTTCTC
AGAAAATGTAGATAGCCTTACAAGCTTTAAGTCCATGAAAAATGGTAATGATAAGGACAT
CACTGCTGAACTATCTTCTCCTGTGAAAGGACAGTCTGATGTTTTACTTTCTACCACCAG
CAAAGAAATAATTTCATCTAAAACTTTAGACACTTCCATTGATGGCATAGAAAATCCAAG
AGATTTAAATAAAGTGGTGGAACAGAGACAGAATGTTGGAACACCTGA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-176, gnl|bosTau2|chr11 (45391021-45391196)
               

               
               1-176, gnl|canFam2|chr10 (67254632-67255362)
               

               
               1-176, gnl|dasNov1|scaffold_123504 (1058-1771)
               

               
               1-176, gnl|echTel1|scaffold_295814 (95993-95271)
               

               
               1-176, gnl|hg17|chr2 (64662811-64663506)
               

               
               1-176, gnl|Hg17|chr2 (64663224-64663399)
               

               
               1-176, gnl|loxAfr1|scaffold_30212 (8940-9652)
               

               
               1-176, gnl|mm7|chr11 (20693895-20693238)
               

               
               1-176, gnl|Mm7|chr11 (20693488-20693313)
               

               
               1-176, gnl|monDom2|scaffold_1 (29972970-29973663)
               

               
               1-176, gnl|oryCun1|scaffold_215019 (1861-2565)
               

               
               1-176, gnl|panTro1|chr12 (66895573-66896262)
               

               
               1-176, gnl|rheMac2|chr13 (64732607-64733296)
               

               
               1-176, gnl|rn3|chr14 (101556555-101555899)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-176, gnl|bosTau2|chr11 (45391021-45391196)
               

               
               1-176, gnl|canFam2|chr10 (67254632-67255362)
               

               
               1-176, gnl|dasNov1|scaffold_123504 (1058-1771)
               

               
               1-176, gnl|echTel1|scaffold_295814 (95993-95271)
               

               
               1-176, gnl|hg17|chr2 (64662811-64663506)
               

               
               1-176, gnl|Hg17|chr2 (64663224-64663399)
               

               
               1-176, gnl|loxAfr1|scaffold_30212 (8940-9652)
               

               
               1-176, gnl|mm7|chr11 (20693895-20693238)
               

               
               1-176, gnl|Mm7|chr11 (20693488-20693313)
               

               
               1-176, gnl|monDom2|scaffold_1 (29972970-29973663)
               

               
               1-176, gnl|oryCun1|scaffold_215019 (1861-2565)
               

               
               1-176, gnl|panTro1|chr12 (66895573-66896262)
               

               
               1-176, gnl|rheMac2|chr13 (64732607-64733296)
               

               
               1-176, gnl|rn3|chr14 (101556555-101555899)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)
               

               
               cty (0.10408)

	1-176, gnl\|bosTau2\|chr11 (45391021-45391196)
	1-176, gnl\|canFam2\|chr10 (67254632-67255362)
	1-176, gnl\|dasNov1\|scaffold_123504 (1058-1771)
	1-176, gnl\|echTel1\|scaffold_295814 (95993-95271)
	1-176, gnl\|hg17\|chr2 (64662811-64663506)
	1-176, gnl\|Hg17\|chr2 (64663224-64663399)
	1-176, gnl\|loxAfr1\|scaffold_30212 (8940-9652)
	1-176, gnl\|mm7\|chr11 (20693895-20693238)
	1-176, gnl\|Mm7\|chr11 (20693488-20693313)
	1-176, gnl\|monDom2\|scaffold_1 (29972970-29973663)
	1-176, gnl\|oryCun1\|scaffold_215019 (1861-2565)
	1-176, gnl\|panTro1\|chr12 (66895573-66896262)
	1-176, gnl\|rheMac2\|chr13 (64732607-64733296)
	1-176, gnl\|rn3\|chr14 (101556555-101555899)