Non-Coding RNA Search

Ss1.1-Mixn-0015c13.5

Sequence:


               
               GAAGGGTTGATGGGTGCCAAGCAGGGTGGGAGAGGGGTGGAGGGCTGCATTCTGGTTAGG
TCATGAAAAATGACAGTGACAAGTCAGTTACAGAAGGAACAATGCCTGCTGGAAGGAATG
AAGCTTGGTAGTAAATACATGCTCATCCTTTAAGCTTGAGGAGAGAAGTAAGTTCACGTT
TCAAGGAGGGAGAACGTTGTTGTGGGCTCTGTGTTGGGAGGTGGCCAATTTTCTGGAATG
GAATGTGTGGGGAATGAAAAAAGAATGAATAAGAATTGTTTTTCAAATAGGATCCTTGAA
CGTTATTGACAAGAGGGACAAGATTGACTGGAGAGGGCTTGAAATGATTTGGGAAAACAA
TTGCTTTTTGAGGCTCAGTGACCAAGGCGAGGATTCCAACTTGAAAAACAAAACAAAACA
AAATAAATGAAGTTGCAGATTTATTTTGCAACACTAGGGGGCGCCAAGGTCTCCGTTTTA
ATCCTGCATCCTGTATCCCTAACAAAGATTTGGTCTCTGCAATCTTACATTATTAATGTT
TCTCAGATGGCTGAGGGGCTTGCTTCATCTGTTCTGTCTGACACTTATCTCAAGTCTGTC
TGTAATTTCCTAATGTTCTCAGGATGTGCTCTGATAAAACCCTCCCCCTAACCCCAGTTA
ATAATAAAAATTTACAGATTATTCAAATACCTGAGTTTTTTTTAATACGTGTGCAGAGGA
GTAAATAGGACCACGAGTCTATTAAAATGTAATTCAGAGTAGCCAGATGATGGACTGATA
TCATGTATACTGTACCTTTTTCTGATTTAATAAAAAAAAATACATTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGGTTGATGGGTGCCAAGCAGGGTGGGAGAGGGGTGGAGGGCTGCATTCTGGTTAGG
TCATGAAAAATGACAGTGACAAGTCAGTTACAGAAGGAACAATGCCTGCTGGAAGGAATG
AAGCTTGGTAGTAAATACATGCTCATCCTTTAAGCTTGAGGAGAGAAGTAAGTTCACGTT
TCAAGGAGGGAGAACGTTGTTGTGGGCTCTGTGTTGGGAGGTGGCCAATTTTCTGGAATG
GAATGTGTGGGGAATGAAAAAAGAATGAATAAGAATTGTTTTTCAAATAGGATCCTTGAA
CGTTATTGACAAGAGGGACAAGATTGACTGGAGAGGGCTTGAAATGATTTGGGAAAACAA
TTGCTTTTTGAGGCTCAGTGACCAAGGCGAGGATTCCAACTTGAAAAACAAAACAAAACA
AAATAAATGAAGTTGCAGATTTATTTTGCAACACTAGGGGGCGCCAAGGTCTCCGTTTTA
ATCCTGCATCCTGTATCCCTAACAAAGATTTGGTCTCTGCAATCTTACATTATTAATGTT
TCTCAGATGGCTGAGGGGCTTGCTTCATCTGTTCTGTCTGACACTTATCTCAAGTCTGTC
TGTAATTTCCTAATGTTCTCAGGATGTGCTCTGATAAAACCCTCCCCCTAACCCCAGTTA
ATAATAAAAATTTACAGATTATTCAAATACCTGAGTTTTTTTTAATACGTGTGCAGAGGA
GTAAATAGGACCACGAGTCTATTAAAATGTAATTCAGAGTAGCCAGATGATGGACTGATA
TCATGTATACTGTACCTTTTTCTGATTTAATAAAAAAAAATACATTTAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               398-502, - strand, RNAz p=0.994581

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-502, - strand, RNAz p=0.994581

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-826, gnl|bosTau2|chr13 (62491666-62490818)
               

               
               9-826, gnl|Hg17|chr20 (51994625-51993497)
               

               
               9-826, gnl|Mm7|chr2 (170140495-170139648)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-826, gnl|bosTau2|chr13 (62491666-62490818)
               

               
               9-826, gnl|Hg17|chr20 (51994625-51993497)
               

               
               9-826, gnl|Mm7|chr2 (170140495-170139648)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               spc (1.70049)
               

               
               fbs (1.05208)
               

               
               fce (0.543183)
               

               
               fcc (0.39557)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (1.70049)
               

               
               fbs (1.05208)
               

               
               fce (0.543183)
               

               
               fcc (0.39557)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

	9-826, gnl\|bosTau2\|chr13 (62491666-62490818)
	9-826, gnl\|Hg17\|chr20 (51994625-51993497)
	9-826, gnl\|Mm7\|chr2 (170140495-170139648)

	spc (1.70049)
	fbs (1.05208)
	fce (0.543183)
	fcc (0.39557)
	ill (0.175593)
	rec (0.17307)
	fhi (0.169578)
	hyp (0.142837)
	bla (0.124347)