Non-Coding RNA Search

Ss1.1-Mixn-0015i15.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAGCAGCCACTACTTTTATTGCACAT
CTGCCATGTGCCTGGACCTTCTACACGTGAGATCGTCCGATCCTAACGATGGATGACCAC
GAGCACACCCACGACTCTTGAGAAACCGGGTCTCAGAGAGGTTGAGACGCTTGCCCAAGG
CCCCCAGCTGCTGAGTGGTGGAGGGGAGACTCAGGCCCGCCACTCCGGAGCCTGTGTAAT
TTTCACTTTGCCACCACTCAGCCTCCTCGATGAAGGGGGCTCACTGGGGCAGTCTCTGGT
GTGGGCAGTGGCCTCCCCTGGGGAAAGCCGTGGCGGGTGTTACAGAGTTGGCTTTGAGGG
GTGTTAGGAAGAGGGGCCAAGGATCTTCAGGGATCCCAGACCCTTCTCTGCCCCGAGGCC
AGATGGGCAGACTCTGAGGGTTCCGGGAGCCCCAGGGAGGAGCAGTCCCCTCTCCGTGGT
GTGGGTGTGTGGGTGCATGCTGGCTCCTCATCACACAGTCCCTTGGAGGGCTGGGCAGTC
CTGGGGACACGCATATACATAGAGTCACTCTCCCTCCATGAGTGTGCACACACACACTTG
CACACACACTCACTCGCACCCAGGCACGGTTCTGTGGAGGCTGAGGCAGGCTCGGGCTTG
GTCAGATGAGGCTGGCGATGCTGGATGTGGTCTCGTGACGCTGACCAGTGGACAACTGTC
CTGAGATGCTGAAGACACTGCTGTTGGCACTGAGGCCACTGTGGGTGGAGGGGGCGGCCG
CACGCGTCGGGGGGCAGTGTCCACTCACGGCCACCTGATACAGCAGCAGGCCCAGCAGCA
AGAGCCCGCCCGAGGCAGCCAGGGTGATGCCCACGGACAGCATGGCCGCCAGCGGCCGGG
CAGGGGCAGGCGCCGTGGCCAGCCCCGCCAGTGTCAGGCCGGTGACCAGTAGCACCAGGC
CGCTGAGCAGCACGACCAGGGCGTCGGCACCTCCGCCGCTGCGCAGCAGGGCCACGTGGT
GGGGCTGGCGGAGGCAGTTCATGTCCTGCACGGCTGAGCTCATCAGCTGCTTAACCAGGA
CCAGCAGGGCCAGCAGGCAGAGCACTGTGCCCACCGCCAGGCGCCACTCGCCCGAGCGAC
TGCTGGTGGAGGACAGCAGGGCCACTCCACCCGCCCCACAGCCCGCCACGAGGCCCACGG
CCACAGCAAAGCAGAGTGCCGAGCGCCGCGGCTGCTGGGACCACCACAGCTCCACCTGCT
CGGCCAGCACATCCGGGGGCAGCCTCCGGCCCAGTGGGGCCTGAGCCTCTCTTCCAGGCA
TGGCTGAGCTGGCACCGCTAGAAGGGCAGAGGGCAGCGTCAGGGGTCAGAGGTACGGATC
ATGGCCTGGAGCCCCCCCCACCTGCGTGGCAGCTAGAGGCCCAGAGTCCTGTTCCTCGGA
CGGTCCAGGGGATGGTCACCACCGCCTTTCTGGCTCTGGCTCTCTCAGTTGCCTGTCCCA
TCCCGGCTGGCCGAGGGAGCTGGTGCCACGGTGGACGAGGGCACTGGATGCAGGCTCGGA
TAAAGCCTCATTCAGGACTCACATGGCCTCAGCTGTCACCGCTGGCTCAAGAAGTCTGGC
AGTGCTGGATCCGATCTGAGCTAGCAGGGCCGTCAGGTGGGGCGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAGCAGCCACTACTTTTATTGCACAT
CTGCCATGTGCCTGGACCTTCTACACGTGAGATCGTCCGATCCTAACGATGGATGACCAC
GAGCACACCCACGACTCTTGAGAAACCGGGTCTCAGAGAGGTTGAGACGCTTGCCCAAGG
CCCCCAGCTGCTGAGTGGTGGAGGGGAGACTCAGGCCCGCCACTCCGGAGCCTGTGTAAT
TTTCACTTTGCCACCACTCAGCCTCCTCGATGAAGGGGGCTCACTGGGGCAGTCTCTGGT
GTGGGCAGTGGCCTCCCCTGGGGAAAGCCGTGGCGGGTGTTACAGAGTTGGCTTTGAGGG
GTGTTAGGAAGAGGGGCCAAGGATCTTCAGGGATCCCAGACCCTTCTCTGCCCCGAGGCC
AGATGGGCAGACTCTGAGGGTTCCGGGAGCCCCAGGGAGGAGCAGTCCCCTCTCCGTGGT
GTGGGTGTGTGGGTGCATGCTGGCTCCTCATCACACAGTCCCTTGGAGGGCTGGGCAGTC
CTGGGGACACGCATATACATAGAGTCACTCTCCCTCCATGAGTGTGCACACACACACTTG
CACACACACTCACTCGCACCCAGGCACGGTTCTGTGGAGGCTGAGGCAGGCTCGGGCTTG
GTCAGATGAGGCTGGCGATGCTGGATGTGGTCTCGTGACGCTGACCAGTGGACAACTGTC
CTGAGATGCTGAAGACACTGCTGTTGGCACTGAGGCCACTGTGGGTGGAGGGGGCGGCCG
CACGCGTCGGGGGGCAGTGTCCACTCACGGCCACCTGATACAGCAGCAGGCCCAGCAGCA
AGAGCCCGCCCGAGGCAGCCAGGGTGATGCCCACGGACAGCATGGCCGCCAGCGGCCGGG
CAGGGGCAGGCGCCGTGGCCAGCCCCGCCAGTGTCAGGCCGGTGACCAGTAGCACCAGGC
CGCTGAGCAGCACGACCAGGGCGTCGGCACCTCCGCCGCTGCGCAGCAGGGCCACGTGGT
GGGGCTGGCGGAGGCAGTTCATGTCCTGCACGGCTGAGCTCATCAGCTGCTTAACCAGGA
CCAGCAGGGCCAGCAGGCAGAGCACTGTGCCCACCGCCAGGCGCCACTCGCCCGAGCGAC
TGCTGGTGGAGGACAGCAGGGCCACTCCACCCGCCCCACAGCCCGCCACGAGGCCCACGG
CCACAGCAAAGCAGAGTGCCGAGCGCCGCGGCTGCTGGGACCACCACAGCTCCACCTGCT
CGGCCAGCACATCCGGGGGCAGCCTCCGGCCCAGTGGGGCCTGAGCCTCTCTTCCAGGCA
TGGCTGAGCTGGCACCGCTAGAAGGGCAGAGGGCAGCGTCAGGGGTCAGAGGTACGGATC
ATGGCCTGGAGCCCCCCCCACCTGCGTGGCAGCTAGAGGCCCAGAGTCCTGTTCCTCGGA
CGGTCCAGGGGATGGTCACCACCGCCTTTCTGGCTCTGGCTCTCTCAGTTGCCTGTCCCA
TCCCGGCTGGCCGAGGGAGCTGGTGCCACGGTGGACGAGGGCACTGGATGCAGGCTCGGA
TAAAGCCTCATTCAGGACTCACATGGCCTCAGCTGTCACCGCTGGCTCAAGAAGTCTGGC
AGTGCTGGATCCGATCTGAGCTAGCAGGGCCGTCAGGTGGGGCGCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96AQ2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96AQ2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               447-554, - strand, RNAz p=0.835791
               

               
               1017-1136, - strand, RNAz p=0.661125

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               447-554, - strand, RNAz p=0.835791
               

               
               1017-1136, - strand, RNAz p=0.661125

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1060-1286, - strand, RNAmicro p=0.955949

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1060-1286, - strand, RNAmicro p=0.955949

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_144626, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_144626, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               34-1467, gnl|bosTau2|chr3 (67691546-67693005)
               

               
               34-1467, gnl|Hg17|chr1 (43408749-43407340)
               

               
               34-1467, gnl|Mm7|chr4 (117917382-117918812)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-1467, gnl|bosTau2|chr3 (67691546-67693005)
               

               
               34-1467, gnl|Hg17|chr1 (43408749-43407340)
               

               
               34-1467, gnl|Mm7|chr4 (117917382-117918812)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pla (1.47039)
               

               
               nmm (0.265604)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (1.47039)
               

               
               nmm (0.265604)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               jej (0.0989218)

	447-554, - strand, RNAz p=0.835791
	1017-1136, - strand, RNAz p=0.661125

	34-1467, gnl\|bosTau2\|chr3 (67691546-67693005)
	34-1467, gnl\|Hg17\|chr1 (43408749-43407340)
	34-1467, gnl\|Mm7\|chr4 (117917382-117918812)

	pla (1.47039)
	nmm (0.265604)
	nlu (0.191681)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	fhi (0.169578)
	nco (0.161734)
	jej (0.0989218)