Non-Coding RNA Search

Ss1.1-Mixn-0015m21.5

Sequence:


               
               GCGGAAGCAGTCCCAGGTGAACGGGACCCCTGCTACCAAGAGTCCGGCCCCAGACTCCCC
TGCGCAGACCCCAAAGCCGCAAAAGCAAAATGAGAAGCAGTCCCAGGTGAATGCGACCCC
TGCCATCGAGAGTCCGGCCCCAGACCTCTCTGCCCAGACCCCAAAGCCGCAGAAGAAAAA
TCCGAAGCTGTCCCAGGTAAATGGGACGCCTGCCACCAGGAGTCCGGCCCCAGACCCCCC
TACCCAGACCCCAAAGCTGCAGAAGAAAAATCAGAAGCTGTCCCAGGCGAATGCGATGCC
TGCCACCAAGAGTCCGGCCCCAGGCCCCCCTGCCGCAAGCCCCACCGCCTCCGCCCAGAC
TCCAAAGCTGCAAAAGAAAAATCAGAAGCTGTCCCAGGTGACTGTGACGCCTGCCACCAA
GAGTCCGGTCTCAGACCTCCCCACCATAAGCCCTGGCCCCCCTGCCCAGACCCCAAAGCT
GCAGAAGAAAAATCAGAAGCTGTCGCAGATGAAGGGAGCCACCCCGGAATCCCTCGACTC
CCCCGAGGAGCCTGCTGCCAAAAAGCGTCCAAAGAAGAATCTCCCCCAAAAGGGCATCTT
GGGCAAGTCTCCGCAGTCGGCGCTGCCACGGAAAAAGGCCAGGTTGTCTTTGGCCAGCAG
GAGCCCCAGCCTCCTCCAGAGCGGGGCCAGGAAGAAGGTGCAGCCGCGGAAGGTGAAGAA
GCTCTGAGTGCCCCCAGACGCCCTAGAGACTCCTATTTTTTCATCACAATTTTAATTAAA
AAGCTGCTGTCGGAGGTCCTACCTTCCACGCTGCGGGGAGTGGGGTCTGCTGCCAGCCTG
CCGAGAGGTCCCCCTGCACTGGACACAGTCCGAGTCCTTTTCTGAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAAGCAGTCCCAGGTGAACGGGACCCCTGCTACCAAGAGTCCGGCCCCAGACTCCCC
TGCGCAGACCCCAAAGCCGCAAAAGCAAAATGAGAAGCAGTCCCAGGTGAATGCGACCCC
TGCCATCGAGAGTCCGGCCCCAGACCTCTCTGCCCAGACCCCAAAGCCGCAGAAGAAAAA
TCCGAAGCTGTCCCAGGTAAATGGGACGCCTGCCACCAGGAGTCCGGCCCCAGACCCCCC
TACCCAGACCCCAAAGCTGCAGAAGAAAAATCAGAAGCTGTCCCAGGCGAATGCGATGCC
TGCCACCAAGAGTCCGGCCCCAGGCCCCCCTGCCGCAAGCCCCACCGCCTCCGCCCAGAC
TCCAAAGCTGCAAAAGAAAAATCAGAAGCTGTCCCAGGTGACTGTGACGCCTGCCACCAA
GAGTCCGGTCTCAGACCTCCCCACCATAAGCCCTGGCCCCCCTGCCCAGACCCCAAAGCT
GCAGAAGAAAAATCAGAAGCTGTCGCAGATGAAGGGAGCCACCCCGGAATCCCTCGACTC
CCCCGAGGAGCCTGCTGCCAAAAAGCGTCCAAAGAAGAATCTCCCCCAAAAGGGCATCTT
GGGCAAGTCTCCGCAGTCGGCGCTGCCACGGAAAAAGGCCAGGTTGTCTTTGGCCAGCAG
GAGCCCCAGCCTCCTCCAGAGCGGGGCCAGGAAGAAGGTGCAGCCGCGGAAGGTGAAGAA
GCTCTGAGTGCCCCCAGACGCCCTAGAGACTCCTATTTTTTCATCACAATTTTAATTAAA
AAGCTGCTGTCGGAGGTCCTACCTTCCACGCTGCGGGGAGTGGGGTCTGCTGCCAGCCTG
CCGAGAGGTCCCCCTGCACTGGACACAGTCCGAGTCCTTTTCTGAGTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               389-744, gnl|bosTau2|chr19 (19591998-19591649)
               

               
               389-744, gnl|Hg17|chr17 (4389780-4389454)
               

               
               389-744, gnl|Mm7|chr11 (72532713-72533053)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               389-744, gnl|bosTau2|chr19 (19591998-19591649)
               

               
               389-744, gnl|Hg17|chr17 (4389780-4389454)
               

               
               389-744, gnl|Mm7|chr11 (72532713-72533053)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fcc (0.39557)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

	389-744, gnl\|bosTau2\|chr19 (19591998-19591649)
	389-744, gnl\|Hg17\|chr17 (4389780-4389454)
	389-744, gnl\|Mm7\|chr11 (72532713-72533053)

	fcc (0.39557)
	hyp (0.142837)
	lnt (0.142308)
	pla (0.133672)
	ecc (0.115035)