Non-Coding RNA Search

Ss1.1-Mixn-0015n14.5

Sequence:


               
               GGTGAGCGGCGTGTACCGTCGTGCGGGCCGTGATGTGGCCGCCTTGGCCGGTAGGCTGGC
GGCTGCCCAGGCCGCGGGATTGGCGGCGGCCCACAGCGTGCGCCTGGCGCGGGGGGACCT
CTGCGCACTGGCGGAGCGCCTGGACATCGTAGCCGGCTGCCGCTTGCTGCCCGACATCCG
CGGCGTGCCGGGAACCGAGCCTGAACAAGACCCGGGACCGCGAGCCTAGCCATGACCCAC
TCTCCTGCCTGACTGCGCCCTGGCGGCCTTTGGGATGTCGCTCTGTGTCCTGTGTAGCCA
CCCACCCAACTTGCTGTCACCCTCAGGGCTGACCTTGCCCCCTGGAAAATGCTCTCCCGT
GTTTGTGTAGAGGGGCCCGGGCTCAGCTCCTTCTCTCTCCCACCTGCTCTGTCTCTTCCC
TGCCCTAGTCCCTTGGTCCCATTTGCACTTGGTCCCCTCCCCCCTCTCTTGTCCCAAGCT
GAAGCCAAGCCCCCAGGATGGAGAAGTGGGCAGGAGCGCTCTAGGCAGACTCCTTAACAC
AGAAGGCATTTCTTCATTTGGTTAGTTCCTCTTGTCTGCCATCTAAGCTGGGGGTGCGTT
GGTGATTTCGCCCAAAATGTCAGTCCCAAGAAAGGGACCCTTCACTTAACAGAGGTGAAG
CCGTAGCTGGGAAATCAGGGCCCAGATATTTTGGCCCTGGTTCTGCACTTATTTGTATTT
TGTTACTTCACCACATGTTTACTGAGCTCCTGTTCTGTGCTTGTCCAGTGCTGGGCATTG
GGGGTGCAGCAGCCAGGCCGGGCCCTCACGGAGATAACAGTCCACTGGGGAGACAGACAT
GAATGGAATGTTCTCCTAAATAAATGGATAGTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAGCGGCGTGTACCGTCGTGCGGGCCGTGATGTGGCCGCCTTGGCCGGTAGGCTGGC
GGCTGCCCAGGCCGCGGGATTGGCGGCGGCCCACAGCGTGCGCCTGGCGCGGGGGGACCT
CTGCGCACTGGCGGAGCGCCTGGACATCGTAGCCGGCTGCCGCTTGCTGCCCGACATCCG
CGGCGTGCCGGGAACCGAGCCTGAACAAGACCCGGGACCGCGAGCCTAGCCATGACCCAC
TCTCCTGCCTGACTGCGCCCTGGCGGCCTTTGGGATGTCGCTCTGTGTCCTGTGTAGCCA
CCCACCCAACTTGCTGTCACCCTCAGGGCTGACCTTGCCCCCTGGAAAATGCTCTCCCGT
GTTTGTGTAGAGGGGCCCGGGCTCAGCTCCTTCTCTCTCCCACCTGCTCTGTCTCTTCCC
TGCCCTAGTCCCTTGGTCCCATTTGCACTTGGTCCCCTCCCCCCTCTCTTGTCCCAAGCT
GAAGCCAAGCCCCCAGGATGGAGAAGTGGGCAGGAGCGCTCTAGGCAGACTCCTTAACAC
AGAAGGCATTTCTTCATTTGGTTAGTTCCTCTTGTCTGCCATCTAAGCTGGGGGTGCGTT
GGTGATTTCGCCCAAAATGTCAGTCCCAAGAAAGGGACCCTTCACTTAACAGAGGTGAAG
CCGTAGCTGGGAAATCAGGGCCCAGATATTTTGGCCCTGGTTCTGCACTTATTTGTATTT
TGTTACTTCACCACATGTTTACTGAGCTCCTGTTCTGTGCTTGTCCAGTGCTGGGCATTG
GGGGTGCAGCAGCCAGGCCGGGCCCTCACGGAGATAACAGTCCACTGGGGAGACAGACAT
GAATGGAATGTTCTCCTAAATAAATGGATAGTTAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19484230|gb|AAH25913.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19484230|gb|AAH25913.1|

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-353, gnl|bosTau2|chr18 (38689828-38689466)
               

               
               1-353, gnl|canFam2|chr1 (113218462-113217746)
               

               
               1-353, gnl|dasNov1|scaffold_100156 (179-967)
               

               
               1-353, gnl|hg17|chr19 (50374313-50375103)
               

               
               1-353, gnl|Hg17|chr19 (50374775-50375156)
               

               
               1-353, gnl|mm7|chr7 (17190025-17189312)
               

               
               1-353, gnl|oryCun1|scaffold_97894 (3895-3162)
               

               
               1-353, gnl|panTro1|chr20 (47516047-47516831)
               

               
               1-353, gnl|rheMac2|chr19 (51607545-51608330)
               

               
               1-353, gnl|rn3|chr1 (78939127-78938413)
               


               
               390-872, gnl|bosTau2|chr18 (38688501-38688008)
               

               
               390-872, gnl|Hg17|chr19 (50376711-50377197)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-353, gnl|bosTau2|chr18 (38689828-38689466)
               

               
               1-353, gnl|canFam2|chr1 (113218462-113217746)
               

               
               1-353, gnl|dasNov1|scaffold_100156 (179-967)
               

               
               1-353, gnl|hg17|chr19 (50374313-50375103)
               

               
               1-353, gnl|Hg17|chr19 (50374775-50375156)
               

               
               1-353, gnl|mm7|chr7 (17190025-17189312)
               

               
               1-353, gnl|oryCun1|scaffold_97894 (3895-3162)
               

               
               1-353, gnl|panTro1|chr20 (47516047-47516831)
               

               
               1-353, gnl|rheMac2|chr19 (51607545-51608330)
               

               
               1-353, gnl|rn3|chr1 (78939127-78938413)
               


               
               390-872, gnl|bosTau2|chr18 (38688501-38688008)
               

               
               390-872, gnl|Hg17|chr19 (50376711-50377197)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)

	1-353, gnl\|bosTau2\|chr18 (38689828-38689466)
	1-353, gnl\|canFam2\|chr1 (113218462-113217746)
	1-353, gnl\|dasNov1\|scaffold_100156 (179-967)
	1-353, gnl\|hg17\|chr19 (50374313-50375103)
	1-353, gnl\|Hg17\|chr19 (50374775-50375156)
	1-353, gnl\|mm7\|chr7 (17190025-17189312)
	1-353, gnl\|oryCun1\|scaffold_97894 (3895-3162)
	1-353, gnl\|panTro1\|chr20 (47516047-47516831)
	1-353, gnl\|rheMac2\|chr19 (51607545-51608330)
	1-353, gnl\|rn3\|chr1 (78939127-78938413)

	390-872, gnl\|bosTau2\|chr18 (38688501-38688008)
	390-872, gnl\|Hg17\|chr19 (50376711-50377197)