Non-Coding RNA Search

Ss1.1-Mixn-0015n20.5

Sequence:


               
               TGTTCATTTAAATTATTTTCCCCAGATTGGCACATGGAATATTTAAATTTTTATTTTTTT
GTGCCTTTCTGTCCAAATGTTGCATAGTTACCAGGAAGGATTAGTCCAGTGATTACATAA
GAGTTGGGCACCATAAATTCTCTATATTTTGCCTCCTATGGAGGCCTTTGAAATGCATCT
TTATTAAGAATCAAAATATAACCACGATACTGAAAGTCAGTATATGAATGGTGAAATTGT
CACATATCCTATCTCATGCCATTCTTGTTAGTTGACTGGTATTTTTTACCAAGAAGCAAC
TCATTCCAGCATCAACAATAGGATACCTTTAAGTCTGGCAAACGTGTATTTTTGAGGTGT
TTGATTAACTTGGCATGATAATTCCTGACCATCACTACCCACAACTTCTGTTTCTTCATG
GACTAGGCATGCAGAAATAAGCAGTGGATTCTATTGAAACCTAAAGGCATTTTTGAATGA
CACTGTTACCAACCATTAATTGGCTCAGGACCTTTGTAATTTTTATTTAAATATATGAGT
TATCTTTTTTACACTGCTTTTTTCAATGCATTTCTTAATATTTTTTAAGTTTCATGAACG
CATGTTCCACTTATTAAATTCCATAACCATGTAATTCTTGTAATATGTTGATTCAGTGTT
TTGTAAATGAAGTCGTATGTATTTTCAGAGTATTTTTGTATGTACTGTAAGATAACCATC
TTTTCAAAGAGAAAACTTTAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTCATTTAAATTATTTTCCCCAGATTGGCACATGGAATATTTAAATTTTTATTTTTTT
GTGCCTTTCTGTCCAAATGTTGCATAGTTACCAGGAAGGATTAGTCCAGTGATTACATAA
GAGTTGGGCACCATAAATTCTCTATATTTTGCCTCCTATGGAGGCCTTTGAAATGCATCT
TTATTAAGAATCAAAATATAACCACGATACTGAAAGTCAGTATATGAATGGTGAAATTGT
CACATATCCTATCTCATGCCATTCTTGTTAGTTGACTGGTATTTTTTACCAAGAAGCAAC
TCATTCCAGCATCAACAATAGGATACCTTTAAGTCTGGCAAACGTGTATTTTTGAGGTGT
TTGATTAACTTGGCATGATAATTCCTGACCATCACTACCCACAACTTCTGTTTCTTCATG
GACTAGGCATGCAGAAATAAGCAGTGGATTCTATTGAAACCTAAAGGCATTTTTGAATGA
CACTGTTACCAACCATTAATTGGCTCAGGACCTTTGTAATTTTTATTTAAATATATGAGT
TATCTTTTTTACACTGCTTTTTTCAATGCATTTCTTAATATTTTTTAAGTTTCATGAACG
CATGTTCCACTTATTAAATTCCATAACCATGTAATTCTTGTAATATGTTGATTCAGTGTT
TTGTAAATGAAGTCGTATGTATTTTCAGAGTATTTTTGTATGTACTGTAAGATAACCATC
TTTTCAAAGAGAAAACTTTAAAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               115-234, - strand, RNAz p=0.743502

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-234, - strand, RNAz p=0.743502

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr11 (29822930-29823674)
               

               
               1-744, gnl|Hg17|chr2 (60936505-60937251)
               

               
               1-744, gnl|Mm7|chr11 (23815397-23814657)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr11 (29822930-29823674)
               

               
               1-744, gnl|Hg17|chr2 (60936505-60937251)
               

               
               1-744, gnl|Mm7|chr11 (23815397-23814657)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               pro (0.512033)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               eru (0.120048)

	1-744, gnl\|bosTau2\|chr11 (29822930-29823674)
	1-744, gnl\|Hg17\|chr2 (60936505-60937251)
	1-744, gnl\|Mm7\|chr11 (23815397-23814657)

	pro (0.512033)
	fty (0.17584)
	sin (0.174948)
	lyg (0.133103)
	ova (0.129132)
	eru (0.120048)