Non-Coding RNA Search

Ss1.1-Mixn-0015o01.5

Sequence:


               
               CCATCCTTTTCTGAACTGGTCTCCAGGATATCAGCTATCTTCTCTACTTTCATTGGGGAG
CACTATGTCCACGTGAATGCTACTTACGTGAATGTCAAATGTGTTGCTCCATATCCTTCT
CTTTTGTCATCACAAGATAATGTTGATGGCGAGGGGGACACATGATGGAAGGATGCACCT
GCACCACCAGCCCTCTTCTGAAAAACATCATCGAACTGTCCAAACAGCAGTGCACACTTT
GTCCAATATTTTTTTTACTGCCTGGCCACTGAAAGGCCACCAAGTATTTTTTGCTTTTGC
CAAAATTGCACTATGATGGGATTTATATTATTGCTTTAAATGACTGGATTCTAAGGAATT
TGTCATCTGACAAAGCATCAGAGCCAGAAGCTTGGTCCCACAGATCAGTGATCAACAGCA
ATCCTGTAGCTGTGATGATGCTTCTGTCACATTCAGGCCAAAACCTGTGTGCTGGGTTAA
AATTTTTAAAAATCAGGATCCCACCTGATTTCATACAGGGAAGTAAAGTAATGAATCTTG
AGGGCTTCTTGATCACAGGAAATTCAAAAGACGTGGTAATGTCCAGGACGGATGTGGCAG
CCCCAGGACCAGGTTACTTGTTTAGAATTAAAGTGTTTCGAAGAACTTTTATATGTTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCCTTTTCTGAACTGGTCTCCAGGATATCAGCTATCTTCTCTACTTTCATTGGGGAG
CACTATGTCCACGTGAATGCTACTTACGTGAATGTCAAATGTGTTGCTCCATATCCTTCT
CTTTTGTCATCACAAGATAATGTTGATGGCGAGGGGGACACATGATGGAAGGATGCACCT
GCACCACCAGCCCTCTTCTGAAAAACATCATCGAACTGTCCAAACAGCAGTGCACACTTT
GTCCAATATTTTTTTTACTGCCTGGCCACTGAAAGGCCACCAAGTATTTTTTGCTTTTGC
CAAAATTGCACTATGATGGGATTTATATTATTGCTTTAAATGACTGGATTCTAAGGAATT
TGTCATCTGACAAAGCATCAGAGCCAGAAGCTTGGTCCCACAGATCAGTGATCAACAGCA
ATCCTGTAGCTGTGATGATGCTTCTGTCACATTCAGGCCAAAACCTGTGTGCTGGGTTAA
AATTTTTAAAAATCAGGATCCCACCTGATTTCATACAGGGAAGTAAAGTAATGAATCTTG
AGGGCTTCTTGATCACAGGAAATTCAAAAGACGTGGTAATGTCCAGGACGGATGTGGCAG
CCCCAGGACCAGGTTACTTGTTTAGAATTAAAGTGTTTCGAAGAACTTTTATATGTTGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3645948|gb|AAC60383.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3645948|gb|AAC60383.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-158, - strand, RNAz p=0.802697
               

               
               327-484, - strand, RNAz p=0.8857

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-158, - strand, RNAz p=0.802697
               

               
               327-484, - strand, RNAz p=0.8857

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr4 (26916755-26916091)
               

               
               1-660, gnl|Hg17|chr7 (116029938-116030577)
               

               
               1-660, gnl|Mm7|chr6 (17512115-17512770)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr4 (26916755-26916091)
               

               
               1-660, gnl|Hg17|chr7 (116029938-116030577)
               

               
               1-660, gnl|Mm7|chr6 (17512115-17512770)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	40-158, - strand, RNAz p=0.802697
	327-484, - strand, RNAz p=0.8857

	1-660, gnl\|bosTau2\|chr4 (26916755-26916091)
	1-660, gnl\|Hg17\|chr7 (116029938-116030577)
	1-660, gnl\|Mm7\|chr6 (17512115-17512770)

	fcc (0.197785)
	nlu (0.191681)
	bla (0.124347)
	tra (0.123092)
	cty (0.10408)