Ss1.1-Mixn-0015p09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTGAAGCAGACAGTGAGCACCAAGCTTCAACTCTTCCAGACCTGGCAGAGCAGTTTGC CCCTCCTGATGTCGCCCCGCCTCTACTCATCAAGCTAGTGGAAGCCATTGAAAAGAAAGG TCTGGAATGTCCAACTCTATATAGAACACAGAGCTCCAGCAGCGCAGCAGAATTACGACA GCTTCTTGATTGTGATGCCACCTCCGTGGACTTGGAAATGATTGATGTGCATGTTTTAGC CGACGCTTTCAAACGCTATCTCCTGGACTTACCAAATCCTGTCATTCCGGTGGCTGTTTA CAGTGAAATGATTTCTTTAGCCCCAGAAGTGCAAAGCTCGGAAGAATACATCCAGCTGTT GAAGAAGCTCATTCGATCACCTAACATACCTCATCAGTATTGGCTCACACTTCAGTATTT GCTAAAACATTTCTTCAAGCTCTCTCAGACATCCAGCAAAAACCTTTTGAGTGCAAGAGT GCTGTCTGAACTTTTCAGCCCTCTGCTTTTCAGATTCCCAGCAGCCAGCTCTGAGAATAC TGAACACCTCATAAAAGTCATAGAAATTTTAATATCTACCGAATGGAATGAACGCCAGCC TGCACCAGCACTGCCTCCTAAACCACCAAAACCCACTACTGTAGCCAACAACGGTATGAA TAACAATATGTCCTTACAAGATGCTGAATGGTACTGGGGAGATATCTCAGGGAAGAAGTG AATGAAAAACTTCGAGATACAGCTGACGGGACCTTTTTGGTACGAGACGCATCTACTAAA ATGCATGGTGACTACACTCTCACACTAAGGAAAGGAGGAAATAACAAATTAATCAAAATA TTTCACCGAGATGGGAAATACGGCTTCTCTGACCCATTAACCTTCAACTCTGTGGTTGAA CTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAACTGGATGTGAAA TTACTGTATCCCGTATCCAAATACCAACAGGATCAGGTTGTCAAAGAAGATAATATTGAA GCTGTAGGGAAAAAATTACATGAATATAACACTCAATTTCAAGAAAAAAGTCGAGAATAT GATAGATTATATGAAGATTATACCCGTACTTCCCAGGAAATCCAAATGAAAAGAACAGCT ATTGAAGCATTTAATGAAACCATAAAAATATTTGAAGAACAGTGCCAAACCCAGGAGCGG TACAGCAAAGAATACATAGAAAAGTTTAAACGTGAAGGCAATGAGAAAGAAATACAAAGG ATTATGCATAATTATGAAAAGTTAAAGTCTCGCATCAGTGAAATTGTCGACAGCAGAAGA AGGTTGGAGGAGGACCTGAAGAAGCAGGCGGCCGAGTATCGCGAGATTGACAAGCGCATG AACAGCATTAAACCTGACCTCATTCAGCTGAGAAAGACCAGAGACCAATACTTGATGTGG TTGACTCAGAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGCTGGGCAATGAAAACACG GAAGACCAATATTCGCTAGTGGAAGACGACGAGGACTTGCCCCACCACGATGAGAAGACG TGGAATGTCGGAAGCAGCAACCGAAACAAAGCTGAAAACCTACTGCGGGGGAAACGAGAC GGCACTTTTCTGGTCCGGGAAAGCAGTAAACAGGGTTGCTACGCCTGCTCTGTCGTGGTA GACGGCGAGGTCAAGCACTGCGTCATCAACAAGACGGCCACGGGCTACGGCTTCGCCGAG CCCTACAACCTGTACAGCTCCCTGAAGGAACTGGTGCTCCACTACCAACACACGTCCCTG GTGCAGCACAACGACTCCCTCAACGTCACACTAGCCTACCCGGTGTACGCGCAGCAGAGG CGATGAAGGGCCGGCCCTGCCACCTGCTCAAGTTCAACTCTCTGAGGCCTCCGGCAAGCA CAGGGCTCCTCCCCAGCCTGACCCGGGACCTGAGCAGCAGACATGAAGCCGTCTGCCTGC AGATGGGACTCGAGCTTTCGACATAACGGCAGTAGGGGAGACAACGCAGCCTCGCACTGG GCAACGGCCGTGTGGTTCTCACCTGGAGTGCTTAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTGAAGCAGACAGTGAGCACCAAGCTTCAACTCTTCCAGACCTGGCAGAGCAGTTTGC CCCTCCTGATGTCGCCCCGCCTCTACTCATCAAGCTAGTGGAAGCCATTGAAAAGAAAGG TCTGGAATGTCCAACTCTATATAGAACACAGAGCTCCAGCAGCGCAGCAGAATTACGACA GCTTCTTGATTGTGATGCCACCTCCGTGGACTTGGAAATGATTGATGTGCATGTTTTAGC CGACGCTTTCAAACGCTATCTCCTGGACTTACCAAATCCTGTCATTCCGGTGGCTGTTTA CAGTGAAATGATTTCTTTAGCCCCAGAAGTGCAAAGCTCGGAAGAATACATCCAGCTGTT GAAGAAGCTCATTCGATCACCTAACATACCTCATCAGTATTGGCTCACACTTCAGTATTT GCTAAAACATTTCTTCAAGCTCTCTCAGACATCCAGCAAAAACCTTTTGAGTGCAAGAGT GCTGTCTGAACTTTTCAGCCCTCTGCTTTTCAGATTCCCAGCAGCCAGCTCTGAGAATAC TGAACACCTCATAAAAGTCATAGAAATTTTAATATCTACCGAATGGAATGAACGCCAGCC TGCACCAGCACTGCCTCCTAAACCACCAAAACCCACTACTGTAGCCAACAACGGTATGAA TAACAATATGTCCTTACAAGATGCTGAATGGTACTGGGGAGATATCTCAGGGAAGAAGTG AATGAAAAACTTCGAGATACAGCTGACGGGACCTTTTTGGTACGAGACGCATCTACTAAA ATGCATGGTGACTACACTCTCACACTAAGGAAAGGAGGAAATAACAAATTAATCAAAATA TTTCACCGAGATGGGAAATACGGCTTCTCTGACCCATTAACCTTCAACTCTGTGGTTGAA CTAATAAACCACTACCGGAATGAATCTCTAGCTCAGTATAATCCCAAACTGGATGTGAAA TTACTGTATCCCGTATCCAAATACCAACAGGATCAGGTTGTCAAAGAAGATAATATTGAA GCTGTAGGGAAAAAATTACATGAATATAACACTCAATTTCAAGAAAAAAGTCGAGAATAT GATAGATTATATGAAGATTATACCCGTACTTCCCAGGAAATCCAAATGAAAAGAACAGCT ATTGAAGCATTTAATGAAACCATAAAAATATTTGAAGAACAGTGCCAAACCCAGGAGCGG TACAGCAAAGAATACATAGAAAAGTTTAAACGTGAAGGCAATGAGAAAGAAATACAAAGG ATTATGCATAATTATGAAAAGTTAAAGTCTCGCATCAGTGAAATTGTCGACAGCAGAAGA AGGTTGGAGGAGGACCTGAAGAAGCAGGCGGCCGAGTATCGCGAGATTGACAAGCGCATG AACAGCATTAAACCTGACCTCATTCAGCTGAGAAAGACCAGAGACCAATACTTGATGTGG TTGACTCAGAAAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGCTGGGCAATGAAAACACG GAAGACCAATATTCGCTAGTGGAAGACGACGAGGACTTGCCCCACCACGATGAGAAGACG TGGAATGTCGGAAGCAGCAACCGAAACAAAGCTGAAAACCTACTGCGGGGGAAACGAGAC GGCACTTTTCTGGTCCGGGAAAGCAGTAAACAGGGTTGCTACGCCTGCTCTGTCGTGGTA GACGGCGAGGTCAAGCACTGCGTCATCAACAAGACGGCCACGGGCTACGGCTTCGCCGAG CCCTACAACCTGTACAGCTCCCTGAAGGAACTGGTGCTCCACTACCAACACACGTCCCTG GTGCAGCACAACGACTCCCTCAACGTCACACTAGCCTACCCGGTGTACGCGCAGCAGAGG CGATGAAGGGCCGGCCCTGCCACCTGCTCAAGTTCAACTCTCTGAGGCCTCCGGCAAGCA CAGGGCTCCTCCCCAGCCTGACCCGGGACCTGAGCAGCAGACATGAAGCCGTCTGCCTGC AGATGGGACTCGAGCTTTCGACATAACGGCAGTAGGGGAGACAACGCAGCCTCGCACTGG GCAACGGCCGTGTGGTTCTCACCTGGAGTGCTTAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1720-1839, - strand, RNAz p=0.792936 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1720-1839, - strand, RNAz p=0.792936 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 808-991, gnl|bosTau2|chr3 (70262829-70263012) | |
| 808-991, gnl|canFam2|chr15 (17328825-17328615) | |
| 808-991, gnl|danRer3|chrUn (37852031-37852227) | |
| 808-991, gnl|dasNov1|scaffold_12395 (47884-48077) | |
| 808-991, gnl|echTel1|scaffold_221133 (6561-6774) | |
| 808-991, gnl|fr1|chrUn (58537106-58536916) | |
| 808-991, gnl|galGal2|chr8 (21684842-21685053) | |
| 808-991, gnl|hg17|chr1 (46244597-46244810) | |
| 808-991, gnl|Hg17|chr1 (46244785-46244602) | |
| 808-991, gnl|loxAfr1|scaffold_115364 (4208-4421) | |
| 808-991, gnl|mm7|chr4 (115647415-115647202) | |
| 808-991, gnl|Mm7|chr4 (115647225-115647408) | |
| 808-991, gnl|monDom2|scaffold_70 (7010883-7010688) | |
| 808-991, gnl|oryCun1|scaffold_198355 (58367-58151) | |
| 808-991, gnl|panTro1|chr1_random (67347961-67347748) | |
| 808-991, gnl|rheMac2|chr1 (49001884-49002097) | |
| 808-991, gnl|rn3|chr5 (136548665-136548452) | |
| 808-991, gnl|tetNig1|chrUn_random (98455812-98455621) | |
| 808-991, gnl|xenTro1|scaffold_14 (3483652-3483437) | |
| 1115-1260, gnl|bosTau2|chr3 (70271800-70271945) | |
| 1115-1260, gnl|Hg17|chr1 (46239765-46239620) | |
| 1115-1260, gnl|Mm7|chr4 (115662493-115662638) | |
| 1506-1677, gnl|bosTau2|chr7 (4275108-4274937) | |
| 1506-1677, gnl|Hg17|chr19 (18140536-18140707) | |
| 1506-1677, gnl|Mm7|chr8 (69223318-69223147) | |
| 1681-1854, gnl|bosTau2|chr3 (70201381-70201554) | |
| 1681-1854, gnl|canFam2|chr15 (17359240-17359035) | |
| 1681-1854, gnl|danRer3|chrUn (37848570-37848778) | |
| 1681-1854, gnl|dasNov1|scaffold_121816 (1161-956) | |
| 1681-1854, gnl|echTel1|scaffold_294892 (8819-8614) | |
| 1681-1854, gnl|fr1|chrUn (58538505-58538325) | |
| 1681-1854, gnl|galGal2|chr8 (21679662-21679870) | |
| 1681-1854, gnl|hg17|chr1 (46221365-46221570) | |
| 1681-1854, gnl|Hg17|chr1 (46221559-46221386) | |
| 1681-1854, gnl|loxAfr1|scaffold_79474 (4514-4719) | |
| 1681-1854, gnl|mm7|chr4 (115676273-115676070) | |
| 1681-1854, gnl|Mm7|chr4 (115676077-115676250) | |
| 1681-1854, gnl|monDom2|scaffold_70 (7016228-7016023) | |
| 1681-1854, gnl|oryCun1|scaffold_182629 (22530-22325) | |
| 1681-1854, gnl|panTro1|chr1_random (67371450-67371245) | |
| 1681-1854, gnl|rheMac2|chr1 (48975746-48975951) | |
| 1681-1854, gnl|rn3|chr5 (136571701-136571498) | |
| 1681-1854, gnl|tetNig1|chrUn_random (98457224-98457039) | |
| 1681-1854, gnl|xenTro1|scaffold_14 (3489115-3488910) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 808-991, gnl|bosTau2|chr3 (70262829-70263012) | |
| 808-991, gnl|canFam2|chr15 (17328825-17328615) | |
| 808-991, gnl|danRer3|chrUn (37852031-37852227) | |
| 808-991, gnl|dasNov1|scaffold_12395 (47884-48077) | |
| 808-991, gnl|echTel1|scaffold_221133 (6561-6774) | |
| 808-991, gnl|fr1|chrUn (58537106-58536916) | |
| 808-991, gnl|galGal2|chr8 (21684842-21685053) | |
| 808-991, gnl|hg17|chr1 (46244597-46244810) | |
| 808-991, gnl|Hg17|chr1 (46244785-46244602) | |
| 808-991, gnl|loxAfr1|scaffold_115364 (4208-4421) | |
| 808-991, gnl|mm7|chr4 (115647415-115647202) | |
| 808-991, gnl|Mm7|chr4 (115647225-115647408) | |
| 808-991, gnl|monDom2|scaffold_70 (7010883-7010688) | |
| 808-991, gnl|oryCun1|scaffold_198355 (58367-58151) | |
| 808-991, gnl|panTro1|chr1_random (67347961-67347748) | |
| 808-991, gnl|rheMac2|chr1 (49001884-49002097) | |
| 808-991, gnl|rn3|chr5 (136548665-136548452) | |
| 808-991, gnl|tetNig1|chrUn_random (98455812-98455621) | |
| 808-991, gnl|xenTro1|scaffold_14 (3483652-3483437) | |
| 1115-1260, gnl|bosTau2|chr3 (70271800-70271945) | |
| 1115-1260, gnl|Hg17|chr1 (46239765-46239620) | |
| 1115-1260, gnl|Mm7|chr4 (115662493-115662638) | |
| 1506-1677, gnl|bosTau2|chr7 (4275108-4274937) | |
| 1506-1677, gnl|Hg17|chr19 (18140536-18140707) | |
| 1506-1677, gnl|Mm7|chr8 (69223318-69223147) | |
| 1681-1854, gnl|bosTau2|chr3 (70201381-70201554) | |
| 1681-1854, gnl|canFam2|chr15 (17359240-17359035) | |
| 1681-1854, gnl|danRer3|chrUn (37848570-37848778) | |
| 1681-1854, gnl|dasNov1|scaffold_121816 (1161-956) | |
| 1681-1854, gnl|echTel1|scaffold_294892 (8819-8614) | |
| 1681-1854, gnl|fr1|chrUn (58538505-58538325) | |
| 1681-1854, gnl|galGal2|chr8 (21679662-21679870) | |
| 1681-1854, gnl|hg17|chr1 (46221365-46221570) | |
| 1681-1854, gnl|Hg17|chr1 (46221559-46221386) | |
| 1681-1854, gnl|loxAfr1|scaffold_79474 (4514-4719) | |
| 1681-1854, gnl|mm7|chr4 (115676273-115676070) | |
| 1681-1854, gnl|Mm7|chr4 (115676077-115676250) | |
| 1681-1854, gnl|monDom2|scaffold_70 (7016228-7016023) | |
| 1681-1854, gnl|oryCun1|scaffold_182629 (22530-22325) | |
| 1681-1854, gnl|panTro1|chr1_random (67371450-67371245) | |
| 1681-1854, gnl|rheMac2|chr1 (48975746-48975951) | |
| 1681-1854, gnl|rn3|chr5 (136571701-136571498) | |
| 1681-1854, gnl|tetNig1|chrUn_random (98457224-98457039) | |
| 1681-1854, gnl|xenTro1|scaffold_14 (3489115-3488910) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) |