Non-Coding RNA Search

Ss1.1-Mixn-0016a07.5

Sequence:


               
               AAAAGTACTCTATTCTCATGTAGGTTTATTTATGTGCGCGTGTGAATGTGTGTTTTAATT
ATGTGTATTTAACTCTTAAACTCTTAGATTTTAATTTATCCTGTAAATTTCTGTATATAT
AATTTAAAAACAAGAGCCTCCACCAGCAACAGCATGTGGAAGATACAGATTTGTCTTTTC
TTCCTTCCTTCCTTCCTTCCTTCCTCTGGTCTCCTCTGGAAACTCCAAATCATCTATACT
TTAAGGTATCATGCCTCAAAAAGGAATCATTATGTTGGGATTCAAATTCTTTATAATTCA
ATAATGTCAAGAAAGTAAAATAAAAAGGAACGTAACCATTCCCAGATGCCCTTATTTCCA
AAGAACCAGACTCTTGCTTCCTAGATGCAAAGAAGACAGTTGAGCGCTTAAGGGTTGTTT
ATACATTGAGTGTGAGGTTCCACGTCACAACTCAGCTCTGAGGTAACTGCTTTCTTCCCG
TGGCCTGGTCAGAGCACTGCAGCATCACGATACATCAGCCAGCCTGCATCCGATTTCATT
GCTTCCTTCCCACCGGTGTGGTCACAGGGCTGTGTTTCTTAAAGGGATTCTGGTTACTGA
ATGCCTTTCTCACCTCAGAGCAGTTTTGAGATTTAATTGGGGGAAACAGGAATGTTTGGG
AACCAAAATCAAGAAGAGCAGAAATCTCGGTTTGGTCTTGTGCATTAGAACCTGTGCCAC
ACCGCCTCCTCTGATCCCATGTCAGGTTCCTGTCTGACACAGGGTATCCAGGAAGAGCCT
TGAGGACATGGACTAGTACAAAAAAAGAAGTCAGTCCTACCATTGTCATTTGTGCACATC
AGTGAAATCCTGATGAGGACCTGCTTTTTCGTTTGTTTTCCTTTACAATCCAACCCTATT
GTATTTGTATTTAAAATTTGTACACATTTGTATAATAATCTGTTCCTTGTGGTATTTGGT
ACTATTAGAGGAAAAACTTTGGATTCAGACCTTCTTGCAGTTTTTATATCATTGTTTTAT
TTTGTTTTTTAAATAAATTCTAGCGGTTTGATCCAAATCCCATTACAGTTGTATAAAGAA
ACAAAATTTTGTACTTATATTATTAAAAATCACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGTACTCTATTCTCATGTAGGTTTATTTATGTGCGCGTGTGAATGTGTGTTTTAATT
ATGTGTATTTAACTCTTAAACTCTTAGATTTTAATTTATCCTGTAAATTTCTGTATATAT
AATTTAAAAACAAGAGCCTCCACCAGCAACAGCATGTGGAAGATACAGATTTGTCTTTTC
TTCCTTCCTTCCTTCCTTCCTTCCTCTGGTCTCCTCTGGAAACTCCAAATCATCTATACT
TTAAGGTATCATGCCTCAAAAAGGAATCATTATGTTGGGATTCAAATTCTTTATAATTCA
ATAATGTCAAGAAAGTAAAATAAAAAGGAACGTAACCATTCCCAGATGCCCTTATTTCCA
AAGAACCAGACTCTTGCTTCCTAGATGCAAAGAAGACAGTTGAGCGCTTAAGGGTTGTTT
ATACATTGAGTGTGAGGTTCCACGTCACAACTCAGCTCTGAGGTAACTGCTTTCTTCCCG
TGGCCTGGTCAGAGCACTGCAGCATCACGATACATCAGCCAGCCTGCATCCGATTTCATT
GCTTCCTTCCCACCGGTGTGGTCACAGGGCTGTGTTTCTTAAAGGGATTCTGGTTACTGA
ATGCCTTTCTCACCTCAGAGCAGTTTTGAGATTTAATTGGGGGAAACAGGAATGTTTGGG
AACCAAAATCAAGAAGAGCAGAAATCTCGGTTTGGTCTTGTGCATTAGAACCTGTGCCAC
ACCGCCTCCTCTGATCCCATGTCAGGTTCCTGTCTGACACAGGGTATCCAGGAAGAGCCT
TGAGGACATGGACTAGTACAAAAAAAGAAGTCAGTCCTACCATTGTCATTTGTGCACATC
AGTGAAATCCTGATGAGGACCTGCTTTTTCGTTTGTTTTCCTTTACAATCCAACCCTATT
GTATTTGTATTTAAAATTTGTACACATTTGTATAATAATCTGTTCCTTGTGGTATTTGGT
ACTATTAGAGGAAAAACTTTGGATTCAGACCTTCTTGCAGTTTTTATATCATTGTTTTAT
TTTGTTTTTTAAATAAATTCTAGCGGTTTGATCCAAATCCCATTACAGTTGTATAAAGAA
ACAAAATTTTGTACTTATATTATTAAAAATCACATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               275-420, - strand, RNAz p=0.963255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               275-420, - strand, RNAz p=0.963255

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1116, gnl|bosTau2|chr5 (43667746-43666608)
               

               
               1-1116, gnl|Hg17|chr22 (34015156-34016341)
               

               
               1-1116, gnl|Mm7|chr8 (73572824-73573886)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1116, gnl|bosTau2|chr5 (43667746-43666608)
               

               
               1-1116, gnl|Hg17|chr22 (34015156-34016341)
               

               
               1-1116, gnl|Mm7|chr8 (73572824-73573886)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               vin (0.332557)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

	1-1116, gnl\|bosTau2\|chr5 (43667746-43666608)
	1-1116, gnl\|Hg17\|chr22 (34015156-34016341)
	1-1116, gnl\|Mm7\|chr8 (73572824-73573886)

	vin (0.332557)
	cte (0.29274)
	liv (0.292569)
	cbe (0.239234)
	ebs (0.236602)
	cmu (0.186393)
	fbs (0.175346)
	fhi (0.169578)
	tbr (0.154178)
	csk (0.140746)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	eru (0.120048)
	ldo (0.0970026)