Non-Coding RNA Search

Ss1.1-Mixn-0016b12.5

Sequence:


               
               CTCTGCTTAAATTCAAACCAGGAGCCTTCATTGCAGGCGTACCTGTGCAGCCTGTCCTCA
TCCGCTACCCCAACAGTCTGGACACCACCAGCTGGGCATGGAGGGGCCCTGGAGTACTCA
AAGTCCTCTGGCTCACAGCCTCTCAGCCCTGCAGCATCGTGGATGTGGAGTTCCTCCCTG
TGTATCGCCCCAGCCCAGAGGAGAGCAGGGACCCCACCCTCTATGCCAACAATGTCCAGA
GGGTCATGGCACAGGCCCTGGGCATTCCAGCCACTGAGTGCGAGTTTGTAGGGAGCTTAC
CTGTGATTGTGGTGGGCCGGCTGAAGGTAGCACTGGAGCCACAGCTATGGGAACTGGGAA
AGGTACTTCGGAAGGCTGGGCTGTCCCCTGGCTGTGCGGACACTGGGGCAGAGCCAGGCC
GGAGTCGAATGATCAGCCAGGAAGAGTTTGCCAGGCAGCTACAGCTTTCTGATCCCCAGA
TGGTGGCTGGTGCCTTTAGCTACTTCCAGCAGGATGCCAGTGGTTTGGTGGACTTCCGAG
ATGTCACGCTCGCATTGGCAGCTCTGGATGGGAGCAGGAGCCTAGAGGAGCTGACTTGCC
TGGCCTTCGAGCTTTTTGCCGAGGAGCAGGCCGAGGCGCCTGGCCGCCTGCTGTACAAGG
ACGGCTTCAGCACCATCCTGCACCTGCTGCTGGGGTCGCCCCGCCCTGCCGCCGTGGCTT
TGCATGCCGAGCTATGCCAGGCCGGACCCCGCCAGGGCCTCTCCCTCTGTCAGTTCCAGG
AATTCTCCCTCCACCACCCGCTCCACGGGAAGCTCTTCAGCACCTATCTGCGCCCTTCCC
AGACACCAGACGCCTCCTCCCCAGGCAGCACCCCCGCCCTGGCCAACGGGACTGTGCAGG
CCCCCAAGCAGAAGGGTGACTGAGCACCTTGACCTCCCCAGCTCACACTGGCCCACAGAC
TCAGGGCAGCACCAGGGGCCCACCCTGGGCCTCAAGCCCAGCTCTGTCCTGCTTGATTTT
TTTTGTTATTATTATTGGTTTTTTTAAGTTGGTTTTCATTTTTCGTTTTATTTTGTAAGA
AACTATTTTATATATAAATATATATCTATATCTATTTAAAAAAAAAGGGAAGCTCAGTCA
CACCGATGGTGTCATTAGCTGGGAAGGAAAGGGACTGATGGTTGCAGGCCACCCATGGGA
AGGCCCTAAACAAACATTCCCAAGGTCGGTCCTCTTGGCCACAGACAGATGTATCCTCCT
CACTTCAGACCAACAGGGTGCTCTGCAGAGCATGCAAATCTCCTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGCTTAAATTCAAACCAGGAGCCTTCATTGCAGGCGTACCTGTGCAGCCTGTCCTCA
TCCGCTACCCCAACAGTCTGGACACCACCAGCTGGGCATGGAGGGGCCCTGGAGTACTCA
AAGTCCTCTGGCTCACAGCCTCTCAGCCCTGCAGCATCGTGGATGTGGAGTTCCTCCCTG
TGTATCGCCCCAGCCCAGAGGAGAGCAGGGACCCCACCCTCTATGCCAACAATGTCCAGA
GGGTCATGGCACAGGCCCTGGGCATTCCAGCCACTGAGTGCGAGTTTGTAGGGAGCTTAC
CTGTGATTGTGGTGGGCCGGCTGAAGGTAGCACTGGAGCCACAGCTATGGGAACTGGGAA
AGGTACTTCGGAAGGCTGGGCTGTCCCCTGGCTGTGCGGACACTGGGGCAGAGCCAGGCC
GGAGTCGAATGATCAGCCAGGAAGAGTTTGCCAGGCAGCTACAGCTTTCTGATCCCCAGA
TGGTGGCTGGTGCCTTTAGCTACTTCCAGCAGGATGCCAGTGGTTTGGTGGACTTCCGAG
ATGTCACGCTCGCATTGGCAGCTCTGGATGGGAGCAGGAGCCTAGAGGAGCTGACTTGCC
TGGCCTTCGAGCTTTTTGCCGAGGAGCAGGCCGAGGCGCCTGGCCGCCTGCTGTACAAGG
ACGGCTTCAGCACCATCCTGCACCTGCTGCTGGGGTCGCCCCGCCCTGCCGCCGTGGCTT
TGCATGCCGAGCTATGCCAGGCCGGACCCCGCCAGGGCCTCTCCCTCTGTCAGTTCCAGG
AATTCTCCCTCCACCACCCGCTCCACGGGAAGCTCTTCAGCACCTATCTGCGCCCTTCCC
AGACACCAGACGCCTCCTCCCCAGGCAGCACCCCCGCCCTGGCCAACGGGACTGTGCAGG
CCCCCAAGCAGAAGGGTGACTGAGCACCTTGACCTCCCCAGCTCACACTGGCCCACAGAC
TCAGGGCAGCACCAGGGGCCCACCCTGGGCCTCAAGCCCAGCTCTGTCCTGCTTGATTTT
TTTTGTTATTATTATTGGTTTTTTTAAGTTGGTTTTCATTTTTCGTTTTATTTTGTAAGA
AACTATTTTATATATAAATATATATCTATATCTATTTAAAAAAAAAGGGAAGCTCAGTCA
CACCGATGGTGTCATTAGCTGGGAAGGAAAGGGACTGATGGTTGCAGGCCACCCATGGGA
AGGCCCTAAACAAACATTCCCAAGGTCGGTCCTCTTGGCCACAGACAGATGTATCCTCCT
CACTTCAGACCAACAGGGTGCTCTGCAGAGCATGCAAATCTCCTTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2852636|gb|AAC19156.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2852636|gb|AAC19156.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               907-1052, - strand, RNAz p=0.946562

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               907-1052, - strand, RNAz p=0.946562

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               379-513, gnl|bosTau2|chr10 (21366767-21366633)
               

               
               379-513, gnl|Hg17|chr15 (32441026-32440892)
               

               
               379-513, gnl|Mm7|chr2 (112094900-112095034)
               


               
               769-1258, gnl|bosTau2|chr10 (21364715-21364212)
               

               
               769-1258, gnl|Hg17|chr15 (32438795-32438284)
               

               
               769-1258, gnl|Mm7|chr2 (112096950-112097467)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               379-513, gnl|bosTau2|chr10 (21366767-21366633)
               

               
               379-513, gnl|Hg17|chr15 (32441026-32440892)
               

               
               379-513, gnl|Mm7|chr2 (112094900-112095034)
               


               
               769-1258, gnl|bosTau2|chr10 (21364715-21364212)
               

               
               769-1258, gnl|Hg17|chr15 (32438795-32438284)
               

               
               769-1258, gnl|Mm7|chr2 (112096950-112097467)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	379-513, gnl\|bosTau2\|chr10 (21366767-21366633)
	379-513, gnl\|Hg17\|chr15 (32441026-32440892)
	379-513, gnl\|Mm7\|chr2 (112094900-112095034)

	769-1258, gnl\|bosTau2\|chr10 (21364715-21364212)
	769-1258, gnl\|Hg17\|chr15 (32438795-32438284)
	769-1258, gnl\|Mm7\|chr2 (112096950-112097467)

	fcc (0.197785)
	fty (0.17584)
	ill (0.175593)
	csp (0.161186)
	ebs (0.118301)
	ecc (0.115035)