Non-Coding RNA Search

Ss1.1-Mixn-0016d22.5

Sequence:


               
               CACTTACAGAATTAAGTACGCGCCCATCTCTGGAGGTGACCACGCCGAGGTTGAAGTCCC
CAGGAGCCCACAAACCACAACCAAGGCCACACTCACAGGTCTGAGGCCAGGAACTGAATA
TGGGATTGGAGTGTCTGCTGTGAAGGGGGACAAGGAGAGTGACCCGGCCACCATCAACGC
AGCCACAGACTTGGACCCGCCCAAGGACTTTCGGGTTGCCACCCCAGAGGAGAGCAGCCT
GACCCTGCTCTGTGATGAAGGGGTGGCCAAGTTTGATGTTCTCAAAATCAGAGATACCAA
AAAGCAGTCTGAGCCACTGGAAATAACCCTACTTGCCTCCGAACGTACCAGGGACATAAC
AGGTCTGGAGCCAGCCACTGAATACGAAATTGAACTCTATGGAATAAGCAGTGGAAAACG
GTCCCAGCCAGTCAGTGCTATAGCGACAACAGCCATGGGCTCCCCAAAGGAAATCACTTT
CTCAGACATCACTGAAAACTCAGCCACTGTCAGCTGGATGGTACCCACTGCCCAGGTCGA
GAGCTTCCGGATCACCTATGTGCCCATTACAGGAGGTGCCCCCTCAGTGGTAACTGTGGA
CGGGACTAAGACCCAGACCAGGCTGCTGAGACTCTTACCTGGAGTGGAGTACCTGGTCAG
CGTCATCGCCGTGAAGGGCTTTGAGGAAAGCGAGCCTGTCTCCGGGACGCTCACCACGGC
TCTGGATGGCCCATCTGGCCTGGTGACAGCCAACATCACCGACTCGGAAGCCTTGGCCAT
GTGGCAGCCGGCCATCGCCCCTGTGGATCATTATGTCATCTCCTACACAGGGGACAGAGT
GCCAGAAATTACCCGCACGGTGTCCGGGAACACGGTGGAGTACGCGCTGACCAACCTCGA
GCCTGCCACCGAATACACGCTGAGGATCTTTGCAGAGAAAGGGCCCCAGAAGAGCTCAAC
CATCACCACCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTACAGAATTAAGTACGCGCCCATCTCTGGAGGTGACCACGCCGAGGTTGAAGTCCC
CAGGAGCCCACAAACCACAACCAAGGCCACACTCACAGGTCTGAGGCCAGGAACTGAATA
TGGGATTGGAGTGTCTGCTGTGAAGGGGGACAAGGAGAGTGACCCGGCCACCATCAACGC
AGCCACAGACTTGGACCCGCCCAAGGACTTTCGGGTTGCCACCCCAGAGGAGAGCAGCCT
GACCCTGCTCTGTGATGAAGGGGTGGCCAAGTTTGATGTTCTCAAAATCAGAGATACCAA
AAAGCAGTCTGAGCCACTGGAAATAACCCTACTTGCCTCCGAACGTACCAGGGACATAAC
AGGTCTGGAGCCAGCCACTGAATACGAAATTGAACTCTATGGAATAAGCAGTGGAAAACG
GTCCCAGCCAGTCAGTGCTATAGCGACAACAGCCATGGGCTCCCCAAAGGAAATCACTTT
CTCAGACATCACTGAAAACTCAGCCACTGTCAGCTGGATGGTACCCACTGCCCAGGTCGA
GAGCTTCCGGATCACCTATGTGCCCATTACAGGAGGTGCCCCCTCAGTGGTAACTGTGGA
CGGGACTAAGACCCAGACCAGGCTGCTGAGACTCTTACCTGGAGTGGAGTACCTGGTCAG
CGTCATCGCCGTGAAGGGCTTTGAGGAAAGCGAGCCTGTCTCCGGGACGCTCACCACGGC
TCTGGATGGCCCATCTGGCCTGGTGACAGCCAACATCACCGACTCGGAAGCCTTGGCCAT
GTGGCAGCCGGCCATCGCCCCTGTGGATCATTATGTCATCTCCTACACAGGGGACAGAGT
GCCAGAAATTACCCGCACGGTGTCCGGGAACACGGTGGAGTACGCGCTGACCAACCTCGA
GCCTGCCACCGAATACACGCTGAGGATCTTTGCAGAGAAAGGGCCCCAGAAGAGCTCAAC
CATCACCACCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61836607|ref|XP_604891.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61836607|ref|XP_604891.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               217-335, - strand, RNAz p=0.633072

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               217-335, - strand, RNAz p=0.633072

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               217-452, gnl|bosTau2|chr8 (56651554-56651789)
               

               
               217-452, gnl|Hg17|chr9 (114888478-114888243)
               

               
               217-452, gnl|Mm7|chr4 (63416582-63416347)
               


               
               574-717, gnl|bosTau2|chr8 (56658776-56658919)
               

               
               574-717, gnl|Hg17|chr9 (114882919-114882776)
               

               
               574-717, gnl|Mm7|chr4 (63409043-63408900)
               


               
               838-972, gnl|bosTau2|chr8 (56663159-56663293)
               

               
               838-972, gnl|Hg17|chr9 (114878076-114877942)
               

               
               838-972, gnl|Mm7|chr4 (63404999-63404865)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-452, gnl|bosTau2|chr8 (56651554-56651789)
               

               
               217-452, gnl|Hg17|chr9 (114888478-114888243)
               

               
               217-452, gnl|Mm7|chr4 (63416582-63416347)
               


               
               574-717, gnl|bosTau2|chr8 (56658776-56658919)
               

               
               574-717, gnl|Hg17|chr9 (114882919-114882776)
               

               
               574-717, gnl|Mm7|chr4 (63409043-63408900)
               


               
               838-972, gnl|bosTau2|chr8 (56663159-56663293)
               

               
               838-972, gnl|Hg17|chr9 (114878076-114877942)
               

               
               838-972, gnl|Mm7|chr4 (63404999-63404865)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eru (0.240096)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

	217-452, gnl\|bosTau2\|chr8 (56651554-56651789)
	217-452, gnl\|Hg17\|chr9 (114888478-114888243)
	217-452, gnl\|Mm7\|chr4 (63416582-63416347)

	574-717, gnl\|bosTau2\|chr8 (56658776-56658919)
	574-717, gnl\|Hg17\|chr9 (114882919-114882776)
	574-717, gnl\|Mm7\|chr4 (63409043-63408900)

	838-972, gnl\|bosTau2\|chr8 (56663159-56663293)
	838-972, gnl\|Hg17\|chr9 (114878076-114877942)
	838-972, gnl\|Mm7\|chr4 (63404999-63404865)