Non-Coding RNA Search

Ss1.1-Mixn-0016e10.5

Sequence:


               
               ATTCATCCAGTTCAGTGTGTGCCATATTTAATTGCTATGGGCACAGACCCAGAACCAGCT
ATGCGGAACAAAGCTGATCAGCAACTTGTGGAAATAGACAAAAAATATGCTGGATTCATA
CATATGAAAGCAGTGGCTGGTATGAAGATGTCTTACCAGGTACAACAGGCAATCAACACA
TGCCTAAAAGATCCTGTAAGGGGTTTCCGACAAGACGAGTCCTCCAGTGCTTTGTGTTCA
CACCTTTACTCCATGATCCGTGGAAACCGCCAACACAGACGAGCCTTTCTAATTTCTTTA
CTCAACCTCTTTGATGACACAGCAAAAACAGAAGTGAATATGCTCTTGTACATAGCAGAC
AATCTAGCCTGTTTTCCATACCAGACACAGGAAGAGCCGTTGTTTATAATGCATCATATA
GACATTACACTCTCAGTTTCTGGTAGTAACCTACTGCAGTCATTCAAGGAGTCTATGGTA
AAAGACAAAAGGAAAGAGAGAAAATCATCTCCTAGTAAGGAAAATGAGTCAAGCGAGAGT
GAAGAAGAAGTCTCCAGGCCTCGGAAGTCACGGAAACGAGTAGATTCCGATTCCGATTCC
GATTCAGAAGATGACATAAATTCAGTGATGAAATGTTTGCCAGAAAATTCAGCTCCTTTA
ATTGAGTTTGCAAATGTCTCGCAGGGTATTTTATTGCTTCTGATGTTAAAACAACATTTG
AAGAATCTCTGTGGCTTTTCTGATAGTAAAATTCAGAAATACTCTCCATCTGAATCTGCA
AAAGTGTATGATAAGGCGATAAACCGAAAAACAGGAGTTCATTTTCATCCCAAACAAACA
CTGGACTTCCTGCGGAGTGATATGGCTAATTCCAAAATCACTGAAGATGTGAAGAGGAGT
ATAGTAAAACAGTATCTAGATTTCAAACTTCTCATGGAACATCTGGACCCTGATGAAGAG
GAAGAAGAAGGGGAGGTGTCGGCTAGCACAAATGCTCGAAACAAAGCAATTACCTCGCTG
CTTGGAGGAGGCAGCCCTAAAAATAATGCAGCAGCAGAGACAGAAGATGATGAAAGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCATCCAGTTCAGTGTGTGCCATATTTAATTGCTATGGGCACAGACCCAGAACCAGCT
ATGCGGAACAAAGCTGATCAGCAACTTGTGGAAATAGACAAAAAATATGCTGGATTCATA
CATATGAAAGCAGTGGCTGGTATGAAGATGTCTTACCAGGTACAACAGGCAATCAACACA
TGCCTAAAAGATCCTGTAAGGGGTTTCCGACAAGACGAGTCCTCCAGTGCTTTGTGTTCA
CACCTTTACTCCATGATCCGTGGAAACCGCCAACACAGACGAGCCTTTCTAATTTCTTTA
CTCAACCTCTTTGATGACACAGCAAAAACAGAAGTGAATATGCTCTTGTACATAGCAGAC
AATCTAGCCTGTTTTCCATACCAGACACAGGAAGAGCCGTTGTTTATAATGCATCATATA
GACATTACACTCTCAGTTTCTGGTAGTAACCTACTGCAGTCATTCAAGGAGTCTATGGTA
AAAGACAAAAGGAAAGAGAGAAAATCATCTCCTAGTAAGGAAAATGAGTCAAGCGAGAGT
GAAGAAGAAGTCTCCAGGCCTCGGAAGTCACGGAAACGAGTAGATTCCGATTCCGATTCC
GATTCAGAAGATGACATAAATTCAGTGATGAAATGTTTGCCAGAAAATTCAGCTCCTTTA
ATTGAGTTTGCAAATGTCTCGCAGGGTATTTTATTGCTTCTGATGTTAAAACAACATTTG
AAGAATCTCTGTGGCTTTTCTGATAGTAAAATTCAGAAATACTCTCCATCTGAATCTGCA
AAAGTGTATGATAAGGCGATAAACCGAAAAACAGGAGTTCATTTTCATCCCAAACAAACA
CTGGACTTCCTGCGGAGTGATATGGCTAATTCCAAAATCACTGAAGATGTGAAGAGGAGT
ATAGTAAAACAGTATCTAGATTTCAAACTTCTCATGGAACATCTGGACCCTGATGAAGAG
GAAGAAGAAGGGGAGGTGTCGGCTAGCACAAATGCTCGAAACAAAGCAATTACCTCGCTG
CTTGGAGGAGGCAGCCCTAAAAATAATGCAGCAGCAGAGACAGAAGATGATGAAAGTGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21708155|gb|AAH33847.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21708155|gb|AAH33847.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               97-253, + strand, RNAz p=0.638955

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               97-253, + strand, RNAz p=0.638955

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               97-324, gnl|bosTau2|chr20 (25399056-25399284)
               

               
               97-324, gnl|Hg17|chr5 (37088196-37088425)
               

               
               97-324, gnl|Mm7|chr15 (8127751-8127524)
               


               
               470-753, gnl|bosTau2|chr20 (25404502-25404786)
               

               
               470-753, gnl|Hg17|chr5 (37094748-37095032)
               

               
               470-753, gnl|Mm7|chr15 (8122616-8122332)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-324, gnl|bosTau2|chr20 (25399056-25399284)
               

               
               97-324, gnl|Hg17|chr5 (37088196-37088425)
               

               
               97-324, gnl|Mm7|chr15 (8127751-8127524)
               


               
               470-753, gnl|bosTau2|chr20 (25404502-25404786)
               

               
               470-753, gnl|Hg17|chr5 (37094748-37095032)
               

               
               470-753, gnl|Mm7|chr15 (8122616-8122332)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tes (0.207814)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

	97-324, gnl\|bosTau2\|chr20 (25399056-25399284)
	97-324, gnl\|Hg17\|chr5 (37088196-37088425)
	97-324, gnl\|Mm7\|chr15 (8127751-8127524)

	470-753, gnl\|bosTau2\|chr20 (25404502-25404786)
	470-753, gnl\|Hg17\|chr5 (37094748-37095032)
	470-753, gnl\|Mm7\|chr15 (8122616-8122332)

	tes (0.207814)
	aor (0.195274)
	cmu (0.186393)
	duo (0.172801)
	che (0.136314)
	thg (0.126791)
	clu (0.119646)