Ss1.1-Mixn-0016f20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCAAGTGCGAGGTAGCTCTTGCAAGTGGCCATCGTGTGTGCAGGTCATAACTCTAGCA GAGACGTCATCACCCTGGTGAAGTCCATGCTCTTCTACAGGAAAAATCCACTGCACCTCC ACCTGGTGACTGATGCCGTGGCCAGGAACATTCTGGAGACGCTCTTTCACACATGGATGG TGCCCGCTGTCCGGGTCAGCTTCTATGACGCTGATGAGCTCAAGCCCCAGGTCTCCTGGA TCCCTAACAAGCACTATTCTGGCCTCTATGGGCTAATGAAGCTAGTGCTGCCCGGTGCCC TGCCCCCTGACCTGGCCCGTGTCATTGTTCTGGATACAGATGTCACCTTTGCCTCCAACA TCGCAGAGCTCTGGGCACTCTTTGCTCACTTTTCTGACAAGCAAGTGATCGGTCTCGTGG AGAACCAGAGCGACTGGTACCTTGGCAACCTCTGGAGGAACCACAGGCCCTGGCCTGCCT TGGGCCGGGGGTTTAACACAGGCGTGATTCTTCTGCGGCTGGACCGGCTTCGGCAGGCTG GCTGGGAGCAGATGTGGAAGCTGATCGCCACGCAGGAGCTCCTTACCCTCCCCGCCACCT CACTGGCCGACCAGGACATCTTCAATGCTGTAATCAAGGAGCACCCATGGCTGGTGCAGC CCCTGCCCTGCGTCTGGAACGTGCAGCTGTCAGACCACACGCTGGCTGAGCGCTGCTACT CGGAGGCGTCTGACCTCAAGGTGATCCACTGGAACTCACCAAAAAAGCTTCGCGTGAAGA ACAAGCACGTGGAATCCTTCCGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCAAGTGCGAGGTAGCTCTTGCAAGTGGCCATCGTGTGTGCAGGTCATAACTCTAGCA GAGACGTCATCACCCTGGTGAAGTCCATGCTCTTCTACAGGAAAAATCCACTGCACCTCC ACCTGGTGACTGATGCCGTGGCCAGGAACATTCTGGAGACGCTCTTTCACACATGGATGG TGCCCGCTGTCCGGGTCAGCTTCTATGACGCTGATGAGCTCAAGCCCCAGGTCTCCTGGA TCCCTAACAAGCACTATTCTGGCCTCTATGGGCTAATGAAGCTAGTGCTGCCCGGTGCCC TGCCCCCTGACCTGGCCCGTGTCATTGTTCTGGATACAGATGTCACCTTTGCCTCCAACA TCGCAGAGCTCTGGGCACTCTTTGCTCACTTTTCTGACAAGCAAGTGATCGGTCTCGTGG AGAACCAGAGCGACTGGTACCTTGGCAACCTCTGGAGGAACCACAGGCCCTGGCCTGCCT TGGGCCGGGGGTTTAACACAGGCGTGATTCTTCTGCGGCTGGACCGGCTTCGGCAGGCTG GCTGGGAGCAGATGTGGAAGCTGATCGCCACGCAGGAGCTCCTTACCCTCCCCGCCACCT CACTGGCCGACCAGGACATCTTCAATGCTGTAATCAAGGAGCACCCATGGCTGGTGCAGC CCCTGCCCTGCGTCTGGAACGTGCAGCTGTCAGACCACACGCTGGCTGAGCGCTGCTACT CGGAGGCGTCTGACCTCAAGGTGATCCACTGGAACTCACCAAAAAAGCTTCGCGTGAAGA ACAAGCACGTGGAATCCTTCCGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 278-396, - strand, RNAz p=0.713027 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 278-396, - strand, RNAz p=0.713027 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 223-396, gnl|bosTau2|chr15 (47741469-47741642) | |
| 223-396, gnl|canFam2|chr18 (46534913-46534771) | |
| 223-396, gnl|danRer3|chr18 (46689886-46690028) | |
| 223-396, gnl|dasNov1|scaffold_4877 (8909-9051) | |
| 223-396, gnl|echTel1|scaffold_190096 (2778-2920) | |
| 223-396, gnl|fr1|chrUn (299022408-299022550) | |
| 223-396, gnl|galGal2|chr5 (21188689-21188547) | |
| 223-396, gnl|hg17|chr11 (45902631-45902773) | |
| 223-396, gnl|Hg17|chr11 (45902631-45902804) | |
| 223-396, gnl|loxAfr1|scaffold_39929 (1140-998) | |
| 223-396, gnl|mm7|chr2 (92220381-92220239) | |
| 223-396, gnl|Mm7|chr2 (92220379-92220206) | |
| 223-396, gnl|monDom2|scaffold_33 (11935184-11935326) | |
| 223-396, gnl|oryCun1|scaffold_204989 (52289-52432) | |
| 223-396, gnl|panTro1|chr9 (46408791-46408933) | |
| 223-396, gnl|rheMac2|chr14 (26209610-26209468) | |
| 223-396, gnl|rn3|chr3 (76663698-76663556) | |
| 223-396, gnl|tetNig1|chrUn_random (6459933-6459791) | |
| 223-396, gnl|xenTro1|scaffold_76 (1628550-1628692) | |
| 611-747, gnl|bosTau2|chr15 (47742528-47742664) | |
| 611-747, gnl|Hg17|chr11 (45904345-45904481) | |
| 611-747, gnl|Mm7|chr2 (92218384-92218248) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 223-396, gnl|bosTau2|chr15 (47741469-47741642) | |
| 223-396, gnl|canFam2|chr18 (46534913-46534771) | |
| 223-396, gnl|danRer3|chr18 (46689886-46690028) | |
| 223-396, gnl|dasNov1|scaffold_4877 (8909-9051) | |
| 223-396, gnl|echTel1|scaffold_190096 (2778-2920) | |
| 223-396, gnl|fr1|chrUn (299022408-299022550) | |
| 223-396, gnl|galGal2|chr5 (21188689-21188547) | |
| 223-396, gnl|hg17|chr11 (45902631-45902773) | |
| 223-396, gnl|Hg17|chr11 (45902631-45902804) | |
| 223-396, gnl|loxAfr1|scaffold_39929 (1140-998) | |
| 223-396, gnl|mm7|chr2 (92220381-92220239) | |
| 223-396, gnl|Mm7|chr2 (92220379-92220206) | |
| 223-396, gnl|monDom2|scaffold_33 (11935184-11935326) | |
| 223-396, gnl|oryCun1|scaffold_204989 (52289-52432) | |
| 223-396, gnl|panTro1|chr9 (46408791-46408933) | |
| 223-396, gnl|rheMac2|chr14 (26209610-26209468) | |
| 223-396, gnl|rn3|chr3 (76663698-76663556) | |
| 223-396, gnl|tetNig1|chrUn_random (6459933-6459791) | |
| 223-396, gnl|xenTro1|scaffold_76 (1628550-1628692) | |
| 611-747, gnl|bosTau2|chr15 (47742528-47742664) | |
| 611-747, gnl|Hg17|chr11 (45904345-45904481) | |
| 611-747, gnl|Mm7|chr2 (92218384-92218248) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) |