Non-Coding RNA Search

Ss1.1-Mixn-0016g09.5

Sequence:


               
               AAGATGGCGGCGGCCAAGGCGGGGGTACTGGGAGTGCGATGGCTGCAAAGGGCAGCCCGG
AAAGTGGTGCCGTTGGGTGCACGTACAGCCTCCCATGTTACCAAGGACATGTTCCCAGGA
CCCTATCCCAAGACCCCGGAAGAACGGGCTGCCGCCGCCAAGAAGTATAATATGCGGGTA
GAAGACTACGAGCCTTACCCAGATGATGGCATGGGGTATGGTGACTACCCGAAGCTCCCT
GACCGCTCACAGCAAGAGAGGGATCCATGGTATGACTGGGACCACCCAGACCTGCGGTTG
AACTGGGGTGAACCGATACACTGGGACCTAGACATGTATATCAGGAACCGTGTGGATACA
TCCCCGACTCCTGTTTCTTGGAATACTATGTGTAAGCACCTCTTCGGTTTCGTGGCCTTC
ATGCTGTTCATGTTTTGGGTAGGAGAGATTTACCCCAGCTACCAGCCTGTGGGGCCAAAG
CAATATCCTTACAATGATCTGTACCTGGAACGAGGCGGCGATCCTACCAAAGAACCTGAG
CCAGTGGTTCACTATGAGATCTGAGGAGGCTTTGTGGGCTTTGTGCCCCTGGACTGACTC
CCTCAATCCTAGAGATTTAACCTTAGTGAAATCCCTAATAAAACATAGTGCTGTGCAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATGGCGGCGGCCAAGGCGGGGGTACTGGGAGTGCGATGGCTGCAAAGGGCAGCCCGG
AAAGTGGTGCCGTTGGGTGCACGTACAGCCTCCCATGTTACCAAGGACATGTTCCCAGGA
CCCTATCCCAAGACCCCGGAAGAACGGGCTGCCGCCGCCAAGAAGTATAATATGCGGGTA
GAAGACTACGAGCCTTACCCAGATGATGGCATGGGGTATGGTGACTACCCGAAGCTCCCT
GACCGCTCACAGCAAGAGAGGGATCCATGGTATGACTGGGACCACCCAGACCTGCGGTTG
AACTGGGGTGAACCGATACACTGGGACCTAGACATGTATATCAGGAACCGTGTGGATACA
TCCCCGACTCCTGTTTCTTGGAATACTATGTGTAAGCACCTCTTCGGTTTCGTGGCCTTC
ATGCTGTTCATGTTTTGGGTAGGAGAGATTTACCCCAGCTACCAGCCTGTGGGGCCAAAG
CAATATCCTTACAATGATCTGTACCTGGAACGAGGCGGCGATCCTACCAAAGAACCTGAG
CCAGTGGTTCACTATGAGATCTGAGGAGGCTTTGTGGGCTTTGTGCCCCTGGACTGACTC
CCTCAATCCTAGAGATTTAACCTTAGTGAAATCCCTAATAAAACATAGTGCTGTGCAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38569760|gb|AAR24398.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38569760|gb|AAR24398.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-198, - strand, RNAz p=0.950658

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-198, - strand, RNAz p=0.950658

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-683, gnl|bosTau2|chr10 (30775079-30774403)
               

               
               1-683, gnl|Hg17|chr17 (55317155-55317820)
               

               
               1-683, gnl|Mm7|chr2 (156630351-156631008)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-683, gnl|bosTau2|chr10 (30775079-30774403)
               

               
               1-683, gnl|Hg17|chr17 (55317155-55317820)
               

               
               1-683, gnl|Mm7|chr2 (156630351-156631008)

Expressed library(ies): 37 entry(ies)

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Expressed library(ies): 37 entry(ies)

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               hlv (1.11405)
               

               
               nco (0.808669)
               

               
               cov (0.660764)
               

               
               eje (0.494169)
               

               
               med (0.465008)
               

               
               eli (0.455443)
               

               
               fcc (0.39557)
               

               
               nep (0.36785)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (1.11405)
               

               
               nco (0.808669)
               

               
               cov (0.660764)
               

               
               eje (0.494169)
               

               
               med (0.465008)
               

               
               eli (0.455443)
               

               
               fcc (0.39557)
               

               
               nep (0.36785)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	1-683, gnl\|bosTau2\|chr10 (30775079-30774403)
	1-683, gnl\|Hg17\|chr17 (55317155-55317820)
	1-683, gnl\|Mm7\|chr2 (156630351-156631008)

	hlv (1.11405)
	nco (0.808669)
	cov (0.660764)
	eje (0.494169)
	med (0.465008)
	eli (0.455443)
	fcc (0.39557)
	nep (0.36785)
	cag (0.302389)
	jej (0.296765)
	che (0.272628)
	fce (0.271592)
	ute (0.265569)
	ese (0.253004)
	eru (0.240096)
	ece (0.229305)
	mas (0.210305)
	hea (0.204499)
	col (0.195008)
	ill (0.175593)
	ton (0.1755)
	duo (0.172801)
	fhi (0.169578)
	csp (0.161186)
	cli (0.152812)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	pla (0.133672)
	kid (0.129735)
	eep (0.122564)
	cly (0.120642)
	pgl (0.118483)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)
	ldo (0.0970026)