Non-Coding RNA Search

Ss1.1-Mixn-0016g14.5

Sequence:


               
               GGCAGATTTTACTGGCCAGCAGGATAGCAAGCTCTCCAGAGACTGCCCCCAGTTAAAAAC
TTTCTCTGCCTTCTCCTGAGTTGCTCTTTTATTTTAATCTCTAAATGTATTTCATAGTTT
GTTTTTTAAAAGTTTTCTCTGTGGAAGATTTTAATCTTTCATACTCTTTTCTTTTACCTT
CATTTTTTTTCTTTCCGTATATCCAATCAAGCACTGGACTCATCTGCAAATAGGTATTGC
ATTTGGCACTCCAGGAACAGGTTGAGCTAATCCGTTTTTGATTTTTGGACTATACAGCTG
AACTATTTGAGGAGTATGGGATCTAGAAGTTAAAAGCTTAGGCTGTCTAGTGTCTTTTTC
CTATATCTGTTCATCCCTCCATTCCTTTGCCAAGCTGTCTTTCTTTCAGGCCTGTCCCTC
CAGATTAGAACACTACTGTGAATCCCATTTGTGTCCATATTAACAGACAGCTGAGAAGCA
CTTTTCAACTATTTGGGAGGAAAATGGTCACATTCAGTTAGGGATTTCACACCCATAGGT
AATCATGTCTGTGGCTGGTGCTCCCCAGTCTTCCATTCTCCATATTTTGGGTACTTCGGC
AAAAGCATGAAGCTCATGGTCTTAATAATCCATTCCTTCCCTGAGATTCACCACCTCCCT
CTTCCTGGATGTTCTCTATGTCATCAGTTTTCTCCTTTCTGTCAGAGATGAGGTTATAAT
ATTGGCCCTAAAGTGTCAAGGAGACTCCATTTTTTTGCCACCAGGTTTTTAGCATTTCAA
CATGCAGCTGATTATATTGCTATGTAGGGATTACTGATACATACTCCATTTAACCTTCTA
GCCTGCCCAACATTTTTTCAGCAGCCTGTCTATCCCTGTCTCTGAAATCCTTCCTTTTTT
TGCCCTAAGGCTTTTCTGTCAAGTGTCGTCATATAGTGGTTGTTTCTCAACTCCATCTTA
TTCATTACTTTTTTTCAGTGAAGAAGACATCAGCCAGCCCATCATTGGCTTTTAACCCAG
TATTGGACTGGTGGTTGGTGGAGTAGCTGTCAGGCTGCAGCCACAGGCCAGGGGAAGAGA
CAGGTGACTGTAGATGATCTCCTGCACTTTCAGCAGGTTAGAGGGAACCACTCCTACTCT
GAGTGACATCTGGCCTTCCCTGCAAAGAGTGTACTTACTGTACTTGAAGCAAAGCAGTCA
CATACAAATGACCATGGATGGAATTGTTTGCCAAAGAAATTTTTGGCCTTTCCCTTTCCC
TTAACTGCATCAGGGAAGAATACTTACTTATCTCTAGCTTGGTTTCCACATAAGGTTTTT
TTGAGGAAGGGGACTGGGACAAGAAATCTGTCATGTAGTTAAGTAGGTAAGAAATCTTAT
TAATTCAGTTTTGTTTGAGAGTTGCTTGTCCATATGATTTTTTAAAAGTGAAGGTTTCAC
AAAAACTTTTTTTTCTGAAATTGTTTTTGGGGTAATATTTAAAATGAGAGACATTTTGTA
ACCCTGTAAAATACATAGGGAATATAACATTCCAGTGTACACAAAGAAGGCAAATTCTTT
AATCAAATAAAGAATATTATAAAGTGAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGATTTTACTGGCCAGCAGGATAGCAAGCTCTCCAGAGACTGCCCCCAGTTAAAAAC
TTTCTCTGCCTTCTCCTGAGTTGCTCTTTTATTTTAATCTCTAAATGTATTTCATAGTTT
GTTTTTTAAAAGTTTTCTCTGTGGAAGATTTTAATCTTTCATACTCTTTTCTTTTACCTT
CATTTTTTTTCTTTCCGTATATCCAATCAAGCACTGGACTCATCTGCAAATAGGTATTGC
ATTTGGCACTCCAGGAACAGGTTGAGCTAATCCGTTTTTGATTTTTGGACTATACAGCTG
AACTATTTGAGGAGTATGGGATCTAGAAGTTAAAAGCTTAGGCTGTCTAGTGTCTTTTTC
CTATATCTGTTCATCCCTCCATTCCTTTGCCAAGCTGTCTTTCTTTCAGGCCTGTCCCTC
CAGATTAGAACACTACTGTGAATCCCATTTGTGTCCATATTAACAGACAGCTGAGAAGCA
CTTTTCAACTATTTGGGAGGAAAATGGTCACATTCAGTTAGGGATTTCACACCCATAGGT
AATCATGTCTGTGGCTGGTGCTCCCCAGTCTTCCATTCTCCATATTTTGGGTACTTCGGC
AAAAGCATGAAGCTCATGGTCTTAATAATCCATTCCTTCCCTGAGATTCACCACCTCCCT
CTTCCTGGATGTTCTCTATGTCATCAGTTTTCTCCTTTCTGTCAGAGATGAGGTTATAAT
ATTGGCCCTAAAGTGTCAAGGAGACTCCATTTTTTTGCCACCAGGTTTTTAGCATTTCAA
CATGCAGCTGATTATATTGCTATGTAGGGATTACTGATACATACTCCATTTAACCTTCTA
GCCTGCCCAACATTTTTTCAGCAGCCTGTCTATCCCTGTCTCTGAAATCCTTCCTTTTTT
TGCCCTAAGGCTTTTCTGTCAAGTGTCGTCATATAGTGGTTGTTTCTCAACTCCATCTTA
TTCATTACTTTTTTTCAGTGAAGAAGACATCAGCCAGCCCATCATTGGCTTTTAACCCAG
TATTGGACTGGTGGTTGGTGGAGTAGCTGTCAGGCTGCAGCCACAGGCCAGGGGAAGAGA
CAGGTGACTGTAGATGATCTCCTGCACTTTCAGCAGGTTAGAGGGAACCACTCCTACTCT
GAGTGACATCTGGCCTTCCCTGCAAAGAGTGTACTTACTGTACTTGAAGCAAAGCAGTCA
CATACAAATGACCATGGATGGAATTGTTTGCCAAAGAAATTTTTGGCCTTTCCCTTTCCC
TTAACTGCATCAGGGAAGAATACTTACTTATCTCTAGCTTGGTTTCCACATAAGGTTTTT
TTGAGGAAGGGGACTGGGACAAGAAATCTGTCATGTAGTTAAGTAGGTAAGAAATCTTAT
TAATTCAGTTTTGTTTGAGAGTTGCTTGTCCATATGATTTTTTAAAAGTGAAGGTTTCAC
AAAAACTTTTTTTTCTGAAATTGTTTTTGGGGTAATATTTAAAATGAGAGACATTTTGTA
ACCCTGTAAAATACATAGGGAATATAACATTCCAGTGTACACAAAGAAGGCAAATTCTTT
AATCAAATAAAGAATATTATAAAGTGAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-725, gnl|bosTau2|chr15 (14956388-14955648)
               

               
               1-725, gnl|Hg17|chr11 (117976874-117977971)
               

               
               1-725, gnl|Mm7|chr9 (44678038-44677318)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-725, gnl|bosTau2|chr15 (14956388-14955648)
               

               
               1-725, gnl|Hg17|chr11 (117976874-117977971)
               

               
               1-725, gnl|Mm7|chr9 (44678038-44677318)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

Help | Less info


               
               cje (0.660939)
               

               
               ski (0.586941)
               

               
               sag (0.548145)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               cki (0.495704)
               

               
               spl (0.429553)
               

               
               cst (0.420109)
               

               
               tes (0.415628)
               

               
               eep (0.367692)
               

               
               cut (0.339847)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               cbr (0.255951)
               

               
               thg (0.253582)
               

               
               clu (0.239292)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.660939)
               

               
               ski (0.586941)
               

               
               sag (0.548145)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               cki (0.495704)
               

               
               spl (0.429553)
               

               
               cst (0.420109)
               

               
               tes (0.415628)
               

               
               eep (0.367692)
               

               
               cut (0.339847)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               cbr (0.255951)
               

               
               thg (0.253582)
               

               
               clu (0.239292)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	1-725, gnl\|bosTau2\|chr15 (14956388-14955648)
	1-725, gnl\|Hg17\|chr11 (117976874-117977971)
	1-725, gnl\|Mm7\|chr9 (44678038-44677318)

	cje (0.660939)
	ski (0.586941)
	sag (0.548145)
	sin (0.524843)
	pro (0.512033)
	cki (0.495704)
	spl (0.429553)
	cst (0.420109)
	tes (0.415628)
	eep (0.367692)
	cut (0.339847)
	fco (0.314416)
	sme (0.305437)
	fat (0.294855)
	cte (0.29274)
	ste (0.270416)
	ova (0.258264)
	cbr (0.255951)
	thg (0.253582)
	clu (0.239292)
	spc (0.226732)
	cmu (0.186393)
	fty (0.17584)
	eye (0.170503)
	mga (0.160205)
	isp (0.150376)
	pty (0.142714)
	csk (0.140746)
	che (0.136314)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	cbl (0.114797)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)