Non-Coding RNA Search

Ss1.1-Mixn-0016g23.5

Sequence:


               
               TGAGTCACTCAGTCCCCTCAAAGGGAAGTCTTTGTTAGTAGGAGTATAAAACAGTTCTTA
GAACTGACATTAAAACTCAGACCCATGTGTAGGAAGACCAAAACTGGGAGGGGGAGGAGA
CCCCTGATTTTTTGCTGCTTCCAGAGGTATTAGAAACTGATTCAATTGATTTGAAAATGG
AAAGAAGTGCCTTGACTAGGGAGGATGTGCCAGATGGGGACCAGCTTGGCTGGGTTCTGG
AGGCTGCCAGCTGCAAGGTGAAGGTGGATGAACAAGGGGTGGGAACAGGCCTGGAGCTTT
TTTTTTTTTTTTTCCATTATTTGGCTGACCCCCCCCCCATCTCTGAGCATCCAAGGGGTC
CCTGAAATAGCTCAGGTGCCCCTTGCCTCAAACCTCAGCTCAAACAGTGCCTTTCAACTG
GGACCTCACTTCCTCTACACAGCCCCCCCACTTCCCTCTGCTCCCCAGCATGGTCCAGGC
AGGGATAAGCTGATTGGGCCCAGTTCTCTCCCTTCTCAGCCCCCCAGCTGCTGCCACTGA
AGCCCCCCATCTGGAGCCAAGTGGAAGGGAGCTGAGAAGCTAGCCCCCAGCCCAGCTGGG
GTGTGGGATCAGATCCACCCAGTGGCCTCCTGCCTGGCTCAACAGCACAGCAACCTCCCA
GGCCTGCTTTCCAGGTTTCTGAGGAAGTGTAGGATGAGCACAGCTTGTTGAAGCAGGCTT
CAGAGGCTCTGGGCTTGAAGAGAAGGAGGAAGACAGTGTCTTCCCCACGTGGAGGTCTGC
ATAAGGCCTGGCAAGGTCACCCTGACCCCACCACACCCCAGCATTTTGTTCATACCTGAT
AATAGCTGCATTACTGCCAACTGACCTTATCATAACCCTGTGCACCTTTGAAAAGATTTA
TCGTTTTGAATTGCTGCTTCTAATAACATTTGTTATATTAAAATTATAATTAATGTGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTCACTCAGTCCCCTCAAAGGGAAGTCTTTGTTAGTAGGAGTATAAAACAGTTCTTA
GAACTGACATTAAAACTCAGACCCATGTGTAGGAAGACCAAAACTGGGAGGGGGAGGAGA
CCCCTGATTTTTTGCTGCTTCCAGAGGTATTAGAAACTGATTCAATTGATTTGAAAATGG
AAAGAAGTGCCTTGACTAGGGAGGATGTGCCAGATGGGGACCAGCTTGGCTGGGTTCTGG
AGGCTGCCAGCTGCAAGGTGAAGGTGGATGAACAAGGGGTGGGAACAGGCCTGGAGCTTT
TTTTTTTTTTTTTCCATTATTTGGCTGACCCCCCCCCCATCTCTGAGCATCCAAGGGGTC
CCTGAAATAGCTCAGGTGCCCCTTGCCTCAAACCTCAGCTCAAACAGTGCCTTTCAACTG
GGACCTCACTTCCTCTACACAGCCCCCCCACTTCCCTCTGCTCCCCAGCATGGTCCAGGC
AGGGATAAGCTGATTGGGCCCAGTTCTCTCCCTTCTCAGCCCCCCAGCTGCTGCCACTGA
AGCCCCCCATCTGGAGCCAAGTGGAAGGGAGCTGAGAAGCTAGCCCCCAGCCCAGCTGGG
GTGTGGGATCAGATCCACCCAGTGGCCTCCTGCCTGGCTCAACAGCACAGCAACCTCCCA
GGCCTGCTTTCCAGGTTTCTGAGGAAGTGTAGGATGAGCACAGCTTGTTGAAGCAGGCTT
CAGAGGCTCTGGGCTTGAAGAGAAGGAGGAAGACAGTGTCTTCCCCACGTGGAGGTCTGC
ATAAGGCCTGGCAAGGTCACCCTGACCCCACCACACCCCAGCATTTTGTTCATACCTGAT
AATAGCTGCATTACTGCCAACTGACCTTATCATAACCCTGTGCACCTTTGAAAAGATTTA
TCGTTTTGAATTGCTGCTTCTAATAACATTTGTTATATTAAAATTATAATTAATGTGTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               502-655, - strand, RNAz p=0.999786

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               502-655, - strand, RNAz p=0.999786

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-710, gnl|bosTau2|chr8 (61451148-61451852)
               

               
               1-710, gnl|Hg17|chr9 (120698534-120697782)
               

               
               1-710, gnl|Mm7|chr2 (34902035-34901341)
               


               
               714-960, gnl|bosTau2|chr8 (61451875-61452120)
               

               
               714-960, gnl|Hg17|chr9 (120697759-120697517)
               

               
               714-960, gnl|Mm7|chr2 (34901319-34901077)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-710, gnl|bosTau2|chr8 (61451148-61451852)
               

               
               1-710, gnl|Hg17|chr9 (120698534-120697782)
               

               
               1-710, gnl|Mm7|chr2 (34902035-34901341)
               


               
               714-960, gnl|bosTau2|chr8 (61451875-61452120)
               

               
               714-960, gnl|Hg17|chr9 (120697759-120697517)
               

               
               714-960, gnl|Mm7|chr2 (34901319-34901077)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               amn (0.417711)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               cly (0.241284)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               cly (0.241284)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	1-710, gnl\|bosTau2\|chr8 (61451148-61451852)
	1-710, gnl\|Hg17\|chr9 (120698534-120697782)
	1-710, gnl\|Mm7\|chr2 (34902035-34901341)

	714-960, gnl\|bosTau2\|chr8 (61451875-61452120)
	714-960, gnl\|Hg17\|chr9 (120697759-120697517)
	714-960, gnl\|Mm7\|chr2 (34901319-34901077)

	amn (0.417711)
	elu (0.385356)
	lnt (0.284616)
	cly (0.241284)
	cst (0.140036)
	nca (0.136874)
	lyg (0.133103)
	ecc (0.115035)
	jca (0.11396)