Non-Coding RNA Search

Ss1.1-Mixn-0016i02.5

Sequence:


               
               AGCTTCGAGTCG------------------------------------------------
AAAGAAAAAAGGAAAAAAAGAGAACAAGAGTGAGAGGGTTTTGTAACTTTCAAGTGCCGT
TCAACTGCTGGGATTCAGCGCAAGAAACTTCACAATCACCTTCAGCAACCTTTTTGCCCC
AGCAGCACTCTTGCTGTCATGTCAGGTCCCCAGATCTGACACTGTTACTATGGCCTGATC
TGGACTGTCCCAGCAGCATGCTTGGTGGACTTCAGAATCCCAGCTGCAAGGAGAGCGCCA
GCTATACTCTTTGAGCCAGAAATGCCAACAGGAGGCCTCCAGGCTCAGCCTTGGCTGGCT
GAGGAGGAACTGAGGGGGAGGTGCACAAGAACGGCAGAATGTAGGAGGCAGATGTAGGAC
TTCCCTTTGCAG------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------NACAACAACAAAAAGGACAGCAGA
TGTAGGGCAAGGGGAGCTGGCTCTTAGTCTTGCATGTCCCTCCCATGAGGCANGTGGAAA
TCCTCAACTGCTGTCCCCCCTCAACAGANTAACAACTGTGAGTCCCCACACTGCCTGACT
CCAGCATGTGGCGCAATGCTGGCCAGCANGTGTCTGTAATAATCTGCANGAAACAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTCGAGTCG------------------------------------------------
AAAGAAAAAAGGAAAAAAAGAGAACAAGAGTGAGAGGGTTTTGTAACTTTCAAGTGCCGT
TCAACTGCTGGGATTCAGCGCAAGAAACTTCACAATCACCTTCAGCAACCTTTTTGCCCC
AGCAGCACTCTTGCTGTCATGTCAGGTCCCCAGATCTGACACTGTTACTATGGCCTGATC
TGGACTGTCCCAGCAGCATGCTTGGTGGACTTCAGAATCCCAGCTGCAAGGAGAGCGCCA
GCTATACTCTTTGAGCCAGAAATGCCAACAGGAGGCCTCCAGGCTCAGCCTTGGCTGGCT
GAGGAGGAACTGAGGGGGAGGTGCACAAGAACGGCAGAATGTAGGAGGCAGATGTAGGAC
TTCCCTTTGCAG------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------NACAACAACAAAAAGGACAGCAGA
TGTAGGGCAAGGGGAGCTGGCTCTTAGTCTTGCATGTCCCTCCCATGAGGCANGTGGAAA
TCCTCAACTGCTGTCCCCCCTCAACAGANTAACAACTGTGAGTCCCCACACTGCCTGACT
CCAGCATGTGGCGCAATGCTGGCCAGCANGTGTCTGTAATAATCTGCANGAAACAGGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               147-263, - strand, RNAz p=0.995916

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-263, - strand, RNAz p=0.995916

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               27-350, gnl|bosTau2|chr2 (73508120-73507795)
               

               
               27-350, gnl|Hg17|chr1 (32351399-32351060)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-350, gnl|bosTau2|chr2 (73508120-73507795)
               

               
               27-350, gnl|Hg17|chr1 (32351399-32351060)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	27-350, gnl\|bosTau2\|chr2 (73508120-73507795)
	27-350, gnl\|Hg17\|chr1 (32351399-32351060)