Non-Coding RNA Search

Ss1.1-Mixn-0016i13.5

Sequence:


               
               GACATCTTGATTTTGCATTAAAACATTAATGTAGTGGATATAATTTGATGGTTGTATTTC
ATTAGATTTAATTTCTAGGCCAAGATGTTATTTTTAAAGTGCAGTTTAAGGTTCAGGCAT
GCATTCTGGCTCATAGTGATTGAAAGTACTTAAATTAGTGGGAAAGTAGCATGCTTGCAT
CACATAGAGTGAGATTGGTATTCAGTTACCTCTGTTGCGCCAGTTTGTGTTGCAGTTTAC
CAATTCAATATAGCCCTGCATTTAAAATTCCTTTTTAAGATTGGTGAATTTTATTTTTAT
TAAGAATATAGATATAAAGTACTGTAGTTTACAGCTAGGCCTTGAAATACTTTTTAGGAT
CTGTTAGGAATAAGATTGATATTGTATTGTGTGTAACCTGCACAATGTGGAAAGCTGATA
TACCTGTGCAAAATCTTTGCCTCTGTGCTGTCAGTGTGATGTGCTTTCTGCATGGTTATA
TACTACTAGTGATTTTATCAAAACTTCTAAAACTTAAATTACATGGTAAAAGATCTGTAA
GAGGCTGCATAAATGTTAGTTGGCACATAAAGACAATTGCAGAAGTTGAAGACATGATTG
CTATATTTCAATGTTTATTCCCACTCAACATATTGCCTTCTAAGCTTTCTTTTTTTTTGT
TCAAAGCATGATCTTAAAGATATGTTTAAGTTAATGGATGTAATGCAGGGTTCCTACACT
GTATTGGCGCATGTTGGTGGCCCTCTGTGCCCTAGATATATGCACACAGGGTGCAAGTAA
AAAGCTACAGAGTGAAAGTTGGTTTGGATCCTCTTCATTTCATTTGTTTAGCTTTTCTGT
TATTTTTCTCTACTTACATGTATTCCTGTGAATAAATCCTTGTTAAGTTAACCCTTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACATCTTGATTTTGCATTAAAACATTAATGTAGTGGATATAATTTGATGGTTGTATTTC
ATTAGATTTAATTTCTAGGCCAAGATGTTATTTTTAAAGTGCAGTTTAAGGTTCAGGCAT
GCATTCTGGCTCATAGTGATTGAAAGTACTTAAATTAGTGGGAAAGTAGCATGCTTGCAT
CACATAGAGTGAGATTGGTATTCAGTTACCTCTGTTGCGCCAGTTTGTGTTGCAGTTTAC
CAATTCAATATAGCCCTGCATTTAAAATTCCTTTTTAAGATTGGTGAATTTTATTTTTAT
TAAGAATATAGATATAAAGTACTGTAGTTTACAGCTAGGCCTTGAAATACTTTTTAGGAT
CTGTTAGGAATAAGATTGATATTGTATTGTGTGTAACCTGCACAATGTGGAAAGCTGATA
TACCTGTGCAAAATCTTTGCCTCTGTGCTGTCAGTGTGATGTGCTTTCTGCATGGTTATA
TACTACTAGTGATTTTATCAAAACTTCTAAAACTTAAATTACATGGTAAAAGATCTGTAA
GAGGCTGCATAAATGTTAGTTGGCACATAAAGACAATTGCAGAAGTTGAAGACATGATTG
CTATATTTCAATGTTTATTCCCACTCAACATATTGCCTTCTAAGCTTTCTTTTTTTTTGT
TCAAAGCATGATCTTAAAGATATGTTTAAGTTAATGGATGTAATGCAGGGTTCCTACACT
GTATTGGCGCATGTTGGTGGCCCTCTGTGCCCTAGATATATGCACACAGGGTGCAAGTAA
AAAGCTACAGAGTGAAAGTTGGTTTGGATCCTCTTCATTTCATTTGTTTAGCTTTTCTGT
TATTTTTCTCTACTTACATGTATTCCTGTGAATAAATCCTTGTTAAGTTAACCCTTCAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               116-234, - strand, RNAz p=0.650708
               

               
               653-806, + strand, RNAz p=0.984429

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-234, - strand, RNAz p=0.650708
               

               
               653-806, + strand, RNAz p=0.984429

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               105-196, + strand, RNAmicro p=0.977405

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               105-196, + strand, RNAmicro p=0.977405

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-896, gnl|bosTau2|chr20 (5294366-5295267)
               

               
               1-896, gnl|Hg17|chr5 (72241011-72241911)
               

               
               1-896, gnl|Mm7|chr13 (95913734-95912849)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-896, gnl|bosTau2|chr20 (5294366-5295267)
               

               
               1-896, gnl|Hg17|chr5 (72241011-72241911)
               

               
               1-896, gnl|Mm7|chr13 (95913734-95912849)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               nca (0.273748)
               

               
               tes (0.207814)
               

               
               ova (0.129132)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               tes (0.207814)
               

               
               ova (0.129132)

	116-234, - strand, RNAz p=0.650708
	653-806, + strand, RNAz p=0.984429

	1-896, gnl\|bosTau2\|chr20 (5294366-5295267)
	1-896, gnl\|Hg17\|chr5 (72241011-72241911)
	1-896, gnl\|Mm7\|chr13 (95913734-95912849)