Non-Coding RNA Search

Ss1.1-Mixn-0016j09.5

Sequence:


               
               CACAGGAATCTGCATGGAGTTCCTTTGGCTGTAAGGTTGGAGCTATTTCCCCCAGATTGC
GGAGGAGCTGTTCTGCAAGGTCTATGCCATGATCCCTGCCTTGGCTGTTGCTGGGAAGGA
TCATCTTTGGGCAGAGGAGCTAAGTGTCCAGGCCTGGAAACGCGTGGTGCTTCTCCCTTG
AAATGGGGGTGTCCTGACATGACTGCTGTCCCCTGTCCCCCATCCTCAGGCGAGGGCTGC
ATCGCTCTACGGTTGGAGGCCACGGAAACTCAGCTCCCCATCTACACACCTCTCACCCAC
CACGGAGAGATGATGGGCCACTTCCGGGGGGAGATCAAGCTGCAGACCTCGCAGGGCAAG
ACGAGGGAGAAGCTCTACGACTTTGTGAAGACGGAGCGGGATGAATCCACTGGGCCCAAG
TCCCTGAAGAGCTTCACCAGCCACGACCCCATGAAGCAGTGGGAACCTACCAACAGGGTC
CCTCCGTGCGGCGGCTCTAGCATCACTGAGATCATCAACCCCAACTACATGGGGGTGGGG
CCCTTCGGGCACATGAAGCAGACTCTGTCCCCCGACCAGCAGCCCACGGCCTGGAGCTAT
GACCAGCCCCTCAAGGACGCCTCCCTGGGGGCGGGAAGGGGAGACAGCCCTCCAACCCCA
CCCTCCCAGCCACCTGTATCACCCAAGAAGTTTTCAGCATCCACAGCAAGCCGAGGCCCC
GGGCCCAGGACACAGGAGTCAAGGCCCGGCGACGCGGGGAAGAGCGCGGGGGACGCCTTG
CCTGCCGAGGACCTGCAGATGACCAAGCCCGAGATGTTTGAGAACCCGCTGTATGGGTCT
GTGAGTTCTTTCCCCAAACTGGTTCCCCGGAAGGAGCAGGAATCGCCCAAGATGCTGAGG
AAGGAGCCCCCGCCCTGCCCGGACCCGGGCATCCTGTCACCCAACATCCCGCTCTCCAAA
GCCCAAGAGGCGGAGGGCAGCAAGGGCACCGGCAAGCCGGCGCCCGCGCCCGCGCCCCCG
CCCTTCCTCAGCCCCACGCCCCGCCTCCGCTCCTTCACCTGCTCGTCCTCCGCCGCCACC
GCCGAGGGCCGCCCGGCAGGCGGGGACAAGAGCCAAGGCAAGCCCAAGGCCCCGGCCGGC
CCCCAGGCCCCGGCCCCGGTGCCCGTGCCGGTGCCGGCCAAGCGGCCCATCAAGCCTTCC
AGGTCGGACCTG------------CCGCCCACGCCGGCCCAGCGGCCGCCGCTCCCGGTC
AAGAGCCCGGCCGTCCTGCACCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGGAATCTGCATGGAGTTCCTTTGGCTGTAAGGTTGGAGCTATTTCCCCCAGATTGC
GGAGGAGCTGTTCTGCAAGGTCTATGCCATGATCCCTGCCTTGGCTGTTGCTGGGAAGGA
TCATCTTTGGGCAGAGGAGCTAAGTGTCCAGGCCTGGAAACGCGTGGTGCTTCTCCCTTG
AAATGGGGGTGTCCTGACATGACTGCTGTCCCCTGTCCCCCATCCTCAGGCGAGGGCTGC
ATCGCTCTACGGTTGGAGGCCACGGAAACTCAGCTCCCCATCTACACACCTCTCACCCAC
CACGGAGAGATGATGGGCCACTTCCGGGGGGAGATCAAGCTGCAGACCTCGCAGGGCAAG
ACGAGGGAGAAGCTCTACGACTTTGTGAAGACGGAGCGGGATGAATCCACTGGGCCCAAG
TCCCTGAAGAGCTTCACCAGCCACGACCCCATGAAGCAGTGGGAACCTACCAACAGGGTC
CCTCCGTGCGGCGGCTCTAGCATCACTGAGATCATCAACCCCAACTACATGGGGGTGGGG
CCCTTCGGGCACATGAAGCAGACTCTGTCCCCCGACCAGCAGCCCACGGCCTGGAGCTAT
GACCAGCCCCTCAAGGACGCCTCCCTGGGGGCGGGAAGGGGAGACAGCCCTCCAACCCCA
CCCTCCCAGCCACCTGTATCACCCAAGAAGTTTTCAGCATCCACAGCAAGCCGAGGCCCC
GGGCCCAGGACACAGGAGTCAAGGCCCGGCGACGCGGGGAAGAGCGCGGGGGACGCCTTG
CCTGCCGAGGACCTGCAGATGACCAAGCCCGAGATGTTTGAGAACCCGCTGTATGGGTCT
GTGAGTTCTTTCCCCAAACTGGTTCCCCGGAAGGAGCAGGAATCGCCCAAGATGCTGAGG
AAGGAGCCCCCGCCCTGCCCGGACCCGGGCATCCTGTCACCCAACATCCCGCTCTCCAAA
GCCCAAGAGGCGGAGGGCAGCAAGGGCACCGGCAAGCCGGCGCCCGCGCCCGCGCCCCCG
CCCTTCCTCAGCCCCACGCCCCGCCTCCGCTCCTTCACCTGCTCGTCCTCCGCCGCCACC
GCCGAGGGCCGCCCGGCAGGCGGGGACAAGAGCCAAGGCAAGCCCAAGGCCCCGGCCGGC
CCCCAGGCCCCGGCCCCGGTGCCCGTGCCGGTGCCGGCCAAGCGGCCCATCAAGCCTTCC
AGGTCGGACCTG------------CCGCCCACGCCGGCCCAGCGGCCGCCGCTCCCGGTC
AAGAGCCCGGCCGTCCTGCACCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38649060|gb|AAH62985.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38649060|gb|AAH62985.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               818-937, - strand, RNAz p=0.689426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               818-937, - strand, RNAz p=0.689426

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-379, gnl|bosTau2|chr3 (80739363-80739015)
               

               
               7-379, gnl|Hg17|chr2 (233884271-233884607)
               

               
               7-379, gnl|Mm7|chr1 (87612913-87613268)
               


               
               739-1272, gnl|bosTau2|chr3 (80731655-80731128)
               

               
               739-1272, gnl|Hg17|chr2 (233894767-233895255)
               

               
               739-1272, gnl|Mm7|chr1 (87618773-87619273)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-379, gnl|bosTau2|chr3 (80739363-80739015)
               

               
               7-379, gnl|Hg17|chr2 (233884271-233884607)
               

               
               7-379, gnl|Mm7|chr1 (87612913-87613268)
               


               
               739-1272, gnl|bosTau2|chr3 (80731655-80731128)
               

               
               739-1272, gnl|Hg17|chr2 (233894767-233895255)
               

               
               739-1272, gnl|Mm7|chr1 (87618773-87619273)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cty (0.10408)

	7-379, gnl\|bosTau2\|chr3 (80739363-80739015)
	7-379, gnl\|Hg17\|chr2 (233884271-233884607)
	7-379, gnl\|Mm7\|chr1 (87612913-87613268)

	739-1272, gnl\|bosTau2\|chr3 (80731655-80731128)
	739-1272, gnl\|Hg17\|chr2 (233894767-233895255)
	739-1272, gnl\|Mm7\|chr1 (87618773-87619273)