Non-Coding RNA Search

Ss1.1-Mixn-0016k08.5

Sequence:


               
               TTCCAAACCACCTGAATCAAAACTCAGGGGCGGATGCTTCAGAATACCAGTTTTCAACAG
GCACCTCAGGTGATTCAGAACACACTACTGTTTGAGAACCACTAAGATTGGGAGGGGAGG
TAAAGAAAAGTCTTTTTTTGCTTTAAAGTAAGCTCAGAGCATAATATAGCATTTTCATTG
TTAATGACATTTGCAAGTGTGCACTGATTCTTTTATACTTATGATCTACTACTTTGATGT
TCTTTTTACTAAAATTCTTGGTTTATTAGCAACCAAAAACTAAACTCAGATTGCTGCCTG
TAGCTCTTGGTACTTTGTTAGATGGCTTTTAGACTTACAAAATCATCTTCAGATCGTGGT
CAAGCCATGAAAATCCCCATCTTCAAGTCTGCCTGCTAAAGCTTTTTGCTTTCTTGATTG
TGATTTTTGTGACATTTTATCTCAGACAGTTGTACTTTTTGATAACTTGGGGAAAACAAA
AATTACTTGAATAAAGGACCGCCTGACCCACTGCTTTGCAGTGATCCAGTCTTTGTAAAG
AACATAAATGACAGTCGTGAATATTAAGATGTGATTATCTCTTCCTGTCCACATGCTTAT
TGCAGGGAGACAGTGAACCAAGGATTATATTGGGGATTTTTTTTTATTATAAGATCTAAT
GTAAAATCATCACTTGCAACTTTTTAGATCTGGGTGTTGCCTGTTTAATATATTTCTTTG
AAAGTTTAAAAGGGTTTTCTATCCACTGTTAATTTCAATTGGATAACATTTTGTCAAGTG
TTTTTTTCCTGATTGTTTTTTGATGCTAGCTGGAATTCAAGAAATGACATTGACCTTATT
CAAATAAAGAAATATTTTAGTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCAAACCACCTGAATCAAAACTCAGGGGCGGATGCTTCAGAATACCAGTTTTCAACAG
GCACCTCAGGTGATTCAGAACACACTACTGTTTGAGAACCACTAAGATTGGGAGGGGAGG
TAAAGAAAAGTCTTTTTTTGCTTTAAAGTAAGCTCAGAGCATAATATAGCATTTTCATTG
TTAATGACATTTGCAAGTGTGCACTGATTCTTTTATACTTATGATCTACTACTTTGATGT
TCTTTTTACTAAAATTCTTGGTTTATTAGCAACCAAAAACTAAACTCAGATTGCTGCCTG
TAGCTCTTGGTACTTTGTTAGATGGCTTTTAGACTTACAAAATCATCTTCAGATCGTGGT
CAAGCCATGAAAATCCCCATCTTCAAGTCTGCCTGCTAAAGCTTTTTGCTTTCTTGATTG
TGATTTTTGTGACATTTTATCTCAGACAGTTGTACTTTTTGATAACTTGGGGAAAACAAA
AATTACTTGAATAAAGGACCGCCTGACCCACTGCTTTGCAGTGATCCAGTCTTTGTAAAG
AACATAAATGACAGTCGTGAATATTAAGATGTGATTATCTCTTCCTGTCCACATGCTTAT
TGCAGGGAGACAGTGAACCAAGGATTATATTGGGGATTTTTTTTTATTATAAGATCTAAT
GTAAAATCATCACTTGCAACTTTTTAGATCTGGGTGTTGCCTGTTTAATATATTTCTTTG
AAAGTTTAAAAGGGTTTTCTATCCACTGTTAATTTCAATTGGATAACATTTTGTCAAGTG
TTTTTTTCCTGATTGTTTTTTGATGCTAGCTGGAATTCAAGAAATGACATTGACCTTATT
CAAATAAAGAAATATTTTAGTAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-864, gnl|bosTau2|chr24 (44176350-44177197)
               

               
               1-864, gnl|Hg17|chr18 (55146907-55146035)
               

               
               1-864, gnl|Mm7|chr18 (66376479-66375658)
               


               
               253-862, gnl|bosTau2|chr19 (8235565-8234972)
               

               
               253-862, gnl|Hg17|chr18 (55146660-55146037)
               

               
               253-862, gnl|Mm7|chr18 (66376261-66375660)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-864, gnl|bosTau2|chr24 (44176350-44177197)
               

               
               1-864, gnl|Hg17|chr18 (55146907-55146035)
               

               
               1-864, gnl|Mm7|chr18 (66376479-66375658)
               


               
               253-862, gnl|bosTau2|chr19 (8235565-8234972)
               

               
               253-862, gnl|Hg17|chr18 (55146660-55146037)
               

               
               253-862, gnl|Mm7|chr18 (66376261-66375660)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               pro (0.512033)
               

               
               pla (0.401016)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               mgm (0.180343)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               pla (0.401016)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               mgm (0.180343)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	1-864, gnl\|bosTau2\|chr24 (44176350-44177197)
	1-864, gnl\|Hg17\|chr18 (55146907-55146035)
	1-864, gnl\|Mm7\|chr18 (66376479-66375658)

	253-862, gnl\|bosTau2\|chr19 (8235565-8234972)
	253-862, gnl\|Hg17\|chr18 (55146660-55146037)
	253-862, gnl\|Mm7\|chr18 (66376261-66375660)

	pro (0.512033)
	pla (0.401016)
	sme (0.305437)
	mas (0.210305)
	mgm (0.180343)
	ret (0.128733)
	sug (0.127291)
	nbm (0.0993246)
	ldo (0.0970026)