Non-Coding RNA Search

Ss1.1-Mixn-0016k21.5

Sequence:


               
               GTTACTTTTGGCTTAGAAATCACTTGCGTAATTCTAGAGCTTATAATTGGTGATGCTTCT
TCGTTTTACGTCCTTCTGTTCTCAGGATGGAGAGAATGCATAAAGCTACTATCCATGTCA
GGATTCTTCTATTTATATCTTATTACAATAAAAATTAGTGGCACTTTATTCATAAATATT
CATAAGCCTGTTAATTATCGGTTGTCTTCCTGTGGGTTAATCAACAAGTTATTTTCAACT
TGATTTTCTGACGAGTGAGAAAGCTTTTGCCCTGATGTGTTATGTAACCTTTAAAAGAAT
GGAAAAGGACTAAAATCCAGTTTAGCTTATTTTTTGCAGTATTTTTCTCAGCATATTTGA
TTTATTCTAAAAATGAAATCCAGACTTTTTCTAATACGATGTTACATGAAAAGGAAGAAG
TGACTATTTTGAATTGTCAGTTGTCGTTTTCAAATGTACAAAGCAAAGGGAGAAAAAGAC
ATTTAAATGCATACTTATCTATAAATTTTACATTTCGAAGTAGTTACATGTTTGTTGTAA
GGTTATTTTAAATTGGCCCCAGTCCCATTCCCCCCCCCCACTGCCATGTATGTTTAGTTT
AATTTTTCACAAGCTTTTTTGCTCGTGTCGCAGCTACACGGAGGGGAGAGTTCTCTACCG
CGAATCATCTGCACACCCCGTGATGTGGTTGACCTTCCGTTTTAGCCCCAAACCGTAAGA
GTCGGTCACTTAGGTTTCTCTTCGGTCAGAGTTGGAGAATTAGCCCTTTCATTTCAGGGA
GTTTTTAGGATATTGAGATGTTTTCTGAGCACCAAGTGGTTAGATTGTGCAAGCTTTGTA
ATAATTTGCAGCTGAAACTCATGATACATTTTAATCCATTGGAGACTCATGGGAATGTAT
CAGCCAGAGTAGCAAGTACTTTTTGTTTTTCAACCGGAGTCTGTCATCTTGCAGTATTAC
TGATGCTATTGTAAATTGAATTTAAAGTGGTATTTAAAAAAACAACCTCCTGGTAAACAA
TTTTTATCTGTTTGTATATCTTACTATAGATTATGTACAAGTAACATCTGAATAAAATTA
CACTTTTAACCCTAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTACTTTTGGCTTAGAAATCACTTGCGTAATTCTAGAGCTTATAATTGGTGATGCTTCT
TCGTTTTACGTCCTTCTGTTCTCAGGATGGAGAGAATGCATAAAGCTACTATCCATGTCA
GGATTCTTCTATTTATATCTTATTACAATAAAAATTAGTGGCACTTTATTCATAAATATT
CATAAGCCTGTTAATTATCGGTTGTCTTCCTGTGGGTTAATCAACAAGTTATTTTCAACT
TGATTTTCTGACGAGTGAGAAAGCTTTTGCCCTGATGTGTTATGTAACCTTTAAAAGAAT
GGAAAAGGACTAAAATCCAGTTTAGCTTATTTTTTGCAGTATTTTTCTCAGCATATTTGA
TTTATTCTAAAAATGAAATCCAGACTTTTTCTAATACGATGTTACATGAAAAGGAAGAAG
TGACTATTTTGAATTGTCAGTTGTCGTTTTCAAATGTACAAAGCAAAGGGAGAAAAAGAC
ATTTAAATGCATACTTATCTATAAATTTTACATTTCGAAGTAGTTACATGTTTGTTGTAA
GGTTATTTTAAATTGGCCCCAGTCCCATTCCCCCCCCCCACTGCCATGTATGTTTAGTTT
AATTTTTCACAAGCTTTTTTGCTCGTGTCGCAGCTACACGGAGGGGAGAGTTCTCTACCG
CGAATCATCTGCACACCCCGTGATGTGGTTGACCTTCCGTTTTAGCCCCAAACCGTAAGA
GTCGGTCACTTAGGTTTCTCTTCGGTCAGAGTTGGAGAATTAGCCCTTTCATTTCAGGGA
GTTTTTAGGATATTGAGATGTTTTCTGAGCACCAAGTGGTTAGATTGTGCAAGCTTTGTA
ATAATTTGCAGCTGAAACTCATGATACATTTTAATCCATTGGAGACTCATGGGAATGTAT
CAGCCAGAGTAGCAAGTACTTTTTGTTTTTCAACCGGAGTCTGTCATCTTGCAGTATTAC
TGATGCTATTGTAAATTGAATTTAAAGTGGTATTTAAAAAAACAACCTCCTGGTAAACAA
TTTTTATCTGTTTGTATATCTTACTATAGATTATGTACAAGTAACATCTGAATAAAATTA
CACTTTTAACCCTAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               797-916, + strand, RNAz p=0.571789

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               797-916, + strand, RNAz p=0.571789

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB020707, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB020707, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-549, gnl|bosTau2|chr12 (16516324-16515769)
               

               
               1-549, gnl|Hg17|chr13 (26159954-26160508)
               

               
               1-549, gnl|Mm7|chr5 (145359720-145360246)
               


               
               591-1096, gnl|bosTau2|chr12 (16515766-16515243)
               

               
               591-1096, gnl|Hg17|chr13 (26160539-26161066)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-549, gnl|bosTau2|chr12 (16516324-16515769)
               

               
               1-549, gnl|Hg17|chr13 (26159954-26160508)
               

               
               1-549, gnl|Mm7|chr5 (145359720-145360246)
               


               
               591-1096, gnl|bosTau2|chr12 (16515766-16515243)
               

               
               591-1096, gnl|Hg17|chr13 (26160539-26161066)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fco (0.471624)
               

               
               lun (0.300978)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               lun (0.300978)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

	1-549, gnl\|bosTau2\|chr12 (16516324-16515769)
	1-549, gnl\|Hg17\|chr13 (26159954-26160508)
	1-549, gnl\|Mm7\|chr5 (145359720-145360246)

	591-1096, gnl\|bosTau2\|chr12 (16515766-16515243)
	591-1096, gnl\|Hg17\|chr13 (26160539-26161066)

	fco (0.471624)
	lun (0.300978)
	spc (0.226732)
	tes (0.207814)
	cmu (0.186393)
	sin (0.174948)
	rec (0.17307)
	tbr (0.154178)
	liv (0.146284)
	pla (0.133672)
	ute (0.132784)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	ebs (0.118301)