Non-Coding RNA Search

Ss1.1-Mixn-0016l16.5

Sequence:


               
               GACCAAAAAAAATTTTGAAATCTTTTTTAATGTAGAATAGAAGTTTGGAGCTGGAAAGAT
AGTATTTATGGAAGATTTGTGTGCTTTTGTATATTAAACTCTTCAGGCTGCTGGTAAGGC
AGTTGCTAAGGCACACTTTTTTCCTCTTTATGTTTGTGGACTAGTGTAGCATGTGGTATG
TTTAAATACTTCATTCTCTGCTTCATAATTCTAATACGAACATTATGCCATATTATAGGT
AGAGAGGTAAGCCAAATTGTATATTTTAGTTACTTGGCCTAATCAAGCGTAACCAAAGGG
ATGTTTTTTGTACTTGCCTCACATTAAGCTTGAATAAAAAGGGTGTATCAGCCACATTTC
ATGTCTTTTTCCAAATATGTAGAATTGTGAAGCAAGTTCTCTGCCTACACTAGAAAAATA
GGATATTTATTGGTTGCCTTTTAACTGGAGAGTATTTGAGAACCAATCTGATCTCTCCTT
TTTTAATTGTTAAACATTTTGGTACAGTTCATCACTCCAGTTTGTGACTTTCTCCAGAAG
AGTCTATTTTTGTTTTTGTTACAATGCTTACATTATAACGTGTTTTGGTCATTGGAAACA
AGACGGCTCATAGTCCAGTGATGTAATACAATAATAGTAACATAATATAGTAGTCATTTT
GCTTCAAGGAATTTAATTAGATAGCCAAATAACTGCTCTTTGTTGATTACCTTTGTAGGG
CTTTTGTCTTACTCTATATGGCATTACTGCGAATGTCTGACCGTGAAGCACATACAATAG
AGCACTTGTTAACTTAAGCCTCCTGCATAATGCACTTGTGAAAAGTAGTGCTTGCTACAT
GGTTGGAGATCTTACATCCATGTACTAGGGCTCATTATTTGTAAAATAAATATTTAGTTC
AAGTTGGTACCAGTGAGTTTTCTGGGCTAGCAGTATCCAGCCCGTTTTACTGCAAGCATA
ATCTTGACTGTCTCCCTTTAGGTCAGAGGAGATGTAGAATTTAGGACACTTTGAGACATG
ACATTATACAATAGCTTGTTTTATGTTCCTCAGGCTATCTTGTTCTGTGTTAAAGCTACT
AATTGTTTCAGTGTGAGTTTTAAATAAACGTATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCAAAAAAAATTTTGAAATCTTTTTTAATGTAGAATAGAAGTTTGGAGCTGGAAAGAT
AGTATTTATGGAAGATTTGTGTGCTTTTGTATATTAAACTCTTCAGGCTGCTGGTAAGGC
AGTTGCTAAGGCACACTTTTTTCCTCTTTATGTTTGTGGACTAGTGTAGCATGTGGTATG
TTTAAATACTTCATTCTCTGCTTCATAATTCTAATACGAACATTATGCCATATTATAGGT
AGAGAGGTAAGCCAAATTGTATATTTTAGTTACTTGGCCTAATCAAGCGTAACCAAAGGG
ATGTTTTTTGTACTTGCCTCACATTAAGCTTGAATAAAAAGGGTGTATCAGCCACATTTC
ATGTCTTTTTCCAAATATGTAGAATTGTGAAGCAAGTTCTCTGCCTACACTAGAAAAATA
GGATATTTATTGGTTGCCTTTTAACTGGAGAGTATTTGAGAACCAATCTGATCTCTCCTT
TTTTAATTGTTAAACATTTTGGTACAGTTCATCACTCCAGTTTGTGACTTTCTCCAGAAG
AGTCTATTTTTGTTTTTGTTACAATGCTTACATTATAACGTGTTTTGGTCATTGGAAACA
AGACGGCTCATAGTCCAGTGATGTAATACAATAATAGTAACATAATATAGTAGTCATTTT
GCTTCAAGGAATTTAATTAGATAGCCAAATAACTGCTCTTTGTTGATTACCTTTGTAGGG
CTTTTGTCTTACTCTATATGGCATTACTGCGAATGTCTGACCGTGAAGCACATACAATAG
AGCACTTGTTAACTTAAGCCTCCTGCATAATGCACTTGTGAAAAGTAGTGCTTGCTACAT
GGTTGGAGATCTTACATCCATGTACTAGGGCTCATTATTTGTAAAATAAATATTTAGTTC
AAGTTGGTACCAGTGAGTTTTCTGGGCTAGCAGTATCCAGCCCGTTTTACTGCAAGCATA
ATCTTGACTGTCTCCCTTTAGGTCAGAGGAGATGTAGAATTTAGGACACTTTGAGACATG
ACATTATACAATAGCTTGTTTTATGTTCCTCAGGCTATCTTGTTCTGTGTTAAAGCTACT
AATTGTTTCAGTGTGAGTTTTAAATAAACGTATTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               889-1084, + strand, RNAz p=0.75156

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               889-1084, + strand, RNAz p=0.75156

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1116, gnl|bosTau2|chr23 (119517-120641)
               

               
               1-1116, gnl|Hg17|chr17 (37259377-37258302)
               

               
               1-1116, gnl|Mm7|chr11 (100567106-100566167)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1116, gnl|bosTau2|chr23 (119517-120641)
               

               
               1-1116, gnl|Hg17|chr17 (37259377-37258302)
               

               
               1-1116, gnl|Mm7|chr11 (100567106-100566167)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	1-1116, gnl\|bosTau2\|chr23 (119517-120641)
	1-1116, gnl\|Hg17\|chr17 (37259377-37258302)
	1-1116, gnl\|Mm7\|chr11 (100567106-100566167)

	ebs (0.236602)
	mgp (0.230681)
	cty (0.20816)
	fcc (0.197785)
	fat (0.147427)
	ski (0.146735)
	kid (0.129735)
	ret (0.128733)