Ss1.1-Mixn-0016o08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGGTAAAAAAGAGCGAGCTGTGGTGGACAAGGTGTTTTTTTTAAGGCTCACACGGATT CTGAAAATCATGATTCCTAGAACATTTTGTAAAGAGACGGGCTACTTGATACTCATTGCT ATTATGCTGGTGTCTCGAACATACTGTGACGTTTGGATGATTCAAAATGGGACACTCATT GAAAGTGGTATCATTGGTCGTAGCAGAAAAGATTTCAAGAAATACTTATTCAACTTCATC GCTGCCATGCCTCTCATCTCCCTGGTTAATAACTTCTTGAAGTTTGGGTTAAATGAGCTC AAACTGTGCTTCCGAATAAGACTAACCAAGTACCTCTATGAGGAATACCTCCAAGCTTTC ACATACTATAAAATGGGAAACCTGGACAACAGAATCGCTAATCCAGACCAGCTGCTTACG CAGGATGTAGAAAAGTTTTGTAACAGTGTAGTTGATCTGTATTCAAATCTTAGTAAGCCA TTTTTAGACATAGTTTTATATATCTTCAAGTTAACGAGTGCAATAGGAGCTCAGGGCCCC GCTAGCATGATGGCCTACTTGCTGGTCTCTGGGCTTTTCCTAACTCGACTTAGAAGGCCC ATCGGTAAGATGACGATAACTGAGCAGAAGTACGAAGGGGAGTATAGATACGTTAACTCT CGGCTCATCACAAATAGTGAAGAAATTGCCTTTTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGGTAAAAAAGAGCGAGCTGTGGTGGACAAGGTGTTTTTTTTAAGGCTCACACGGATT CTGAAAATCATGATTCCTAGAACATTTTGTAAAGAGACGGGCTACTTGATACTCATTGCT ATTATGCTGGTGTCTCGAACATACTGTGACGTTTGGATGATTCAAAATGGGACACTCATT GAAAGTGGTATCATTGGTCGTAGCAGAAAAGATTTCAAGAAATACTTATTCAACTTCATC GCTGCCATGCCTCTCATCTCCCTGGTTAATAACTTCTTGAAGTTTGGGTTAAATGAGCTC AAACTGTGCTTCCGAATAAGACTAACCAAGTACCTCTATGAGGAATACCTCCAAGCTTTC ACATACTATAAAATGGGAAACCTGGACAACAGAATCGCTAATCCAGACCAGCTGCTTACG CAGGATGTAGAAAAGTTTTGTAACAGTGTAGTTGATCTGTATTCAAATCTTAGTAAGCCA TTTTTAGACATAGTTTTATATATCTTCAAGTTAACGAGTGCAATAGGAGCTCAGGGCCCC GCTAGCATGATGGCCTACTTGCTGGTCTCTGGGCTTTTCCTAACTCGACTTAGAAGGCCC ATCGGTAAGATGACGATAACTGAGCAGAAGTACGAAGGGGAGTATAGATACGTTAACTCT CGGCTCATCACAAATAGTGAAGAAATTGCCTTTTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 354-477, + strand, RNAz p=0.603039 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 354-477, + strand, RNAz p=0.603039 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 354-477, gnl|bosTau2|chr3 (39398542-39398419) | |
| 354-477, gnl|canFam2|chr6 (57830898-57830738) | |
| 354-477, gnl|danRer3|chr13 (12084976-12085144) | |
| 354-477, gnl|dasNov1|scaffold_55626 (3637-3472) | |
| 354-477, gnl|echTel1|scaffold_315933 (41958-41794) | |
| 354-477, gnl|fr1|chrUn (344262937-344262788) | |
| 354-477, gnl|galGal2|chr8 (13911340-13911181) | |
| 354-477, gnl|hg17|chr1 (94653160-94653326) | |
| 354-477, gnl|Hg17|chr1 (94653191-94653314) | |
| 354-477, gnl|mm7|chr3 (121552954-121552789) | |
| 354-477, gnl|Mm7|chr3 (121552922-121552799) | |
| 354-477, gnl|monDom2|scaffold_0 (26243075-26242900) | |
| 354-477, gnl|oryCun1|scaffold_204264 (24102-24266) | |
| 354-477, gnl|panTro1|chr1 (93638923-93639089) | |
| 354-477, gnl|rheMac2|chr1 (97483604-97483770) | |
| 354-477, gnl|rn3|chr2 (218383277-218383113) | |
| 354-477, gnl|tetNig1|chrUn_random (52000307-52000152) | |
| 354-477, gnl|xenTro1|scaffold_36 (1886667-1886507) | |
| 531-682, gnl|bosTau2|chr3 (39393858-39393707) | |
| 531-682, gnl|canFam2|chr6 (57826400-57826234) | |
| 531-682, gnl|danRer3|chr13 (12085357-12085505) | |
| 531-682, gnl|echTel1|scaffold_311376 (27861-27698) | |
| 531-682, gnl|galGal2|chr8 (13909764-13909595) | |
| 531-682, gnl|hg17|chr1 (94658019-94658188) | |
| 531-682, gnl|Hg17|chr1 (94658037-94658188) | |
| 531-682, gnl|loxAfr1|scaffold_3872 (51895-51726) | |
| 531-682, gnl|mm7|chr3 (121548509-121548340) | |
| 531-682, gnl|Mm7|chr3 (121548489-121548338) | |
| 531-682, gnl|monDom2|scaffold_0 (26238237-26238068) | |
| 531-682, gnl|panTro1|chr1 (93643759-93643928) | |
| 531-682, gnl|rheMac2|chr1 (97488439-97488608) | |
| 531-682, gnl|rn3|chr2 (218379225-218379056) | |
| 531-682, gnl|tetNig1|chrUn_random (51998141-51997977) | |
| 531-682, gnl|xenTro1|scaffold_36 (1885339-1885192) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 354-477, gnl|bosTau2|chr3 (39398542-39398419) | |
| 354-477, gnl|canFam2|chr6 (57830898-57830738) | |
| 354-477, gnl|danRer3|chr13 (12084976-12085144) | |
| 354-477, gnl|dasNov1|scaffold_55626 (3637-3472) | |
| 354-477, gnl|echTel1|scaffold_315933 (41958-41794) | |
| 354-477, gnl|fr1|chrUn (344262937-344262788) | |
| 354-477, gnl|galGal2|chr8 (13911340-13911181) | |
| 354-477, gnl|hg17|chr1 (94653160-94653326) | |
| 354-477, gnl|Hg17|chr1 (94653191-94653314) | |
| 354-477, gnl|mm7|chr3 (121552954-121552789) | |
| 354-477, gnl|Mm7|chr3 (121552922-121552799) | |
| 354-477, gnl|monDom2|scaffold_0 (26243075-26242900) | |
| 354-477, gnl|oryCun1|scaffold_204264 (24102-24266) | |
| 354-477, gnl|panTro1|chr1 (93638923-93639089) | |
| 354-477, gnl|rheMac2|chr1 (97483604-97483770) | |
| 354-477, gnl|rn3|chr2 (218383277-218383113) | |
| 354-477, gnl|tetNig1|chrUn_random (52000307-52000152) | |
| 354-477, gnl|xenTro1|scaffold_36 (1886667-1886507) | |
| 531-682, gnl|bosTau2|chr3 (39393858-39393707) | |
| 531-682, gnl|canFam2|chr6 (57826400-57826234) | |
| 531-682, gnl|danRer3|chr13 (12085357-12085505) | |
| 531-682, gnl|echTel1|scaffold_311376 (27861-27698) | |
| 531-682, gnl|galGal2|chr8 (13909764-13909595) | |
| 531-682, gnl|hg17|chr1 (94658019-94658188) | |
| 531-682, gnl|Hg17|chr1 (94658037-94658188) | |
| 531-682, gnl|loxAfr1|scaffold_3872 (51895-51726) | |
| 531-682, gnl|mm7|chr3 (121548509-121548340) | |
| 531-682, gnl|Mm7|chr3 (121548489-121548338) | |
| 531-682, gnl|monDom2|scaffold_0 (26238237-26238068) | |
| 531-682, gnl|panTro1|chr1 (93643759-93643928) | |
| 531-682, gnl|rheMac2|chr1 (97488439-97488608) | |
| 531-682, gnl|rn3|chr2 (218379225-218379056) | |
| 531-682, gnl|tetNig1|chrUn_random (51998141-51997977) | |
| 531-682, gnl|xenTro1|scaffold_36 (1885339-1885192) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| nje (0.16592) |