Non-Coding RNA Search

Ss1.1-Mixn-0016o19.5

Sequence:


               
               GCACACGACCCTGGAGCACTCGGACTGCGCCTTCATGGTGGACAACGAGGCCATCTACGA
CATCTGTCGGCGCAACCTGGACATCGAGCGGCCCACCTACACCAACCTCAATCGTCTGAT
CGGGCAGATCGTGTCCTCCATCACAGCCTCCCTGCGCTTCGACGGGGCCCTCAACGTGGA
CCTGACGGAGTTCCAGACCAACCTGGTCCCCTACCCCCGCATCCACTTCCCCCTGGCCAC
CTACGCCCCGGTCATCTCGGCCGAGAAGGCCTACCACGAGCAGCTGTCTGTGGCCGAGAT
CACCAACGCCTGCTTCGAGCCGGCCAACCAGATGGTCAAGTGTGACCCTCGCCACGGCAA
GTACATGGCCTGCTGCATGCTGTACAGGGGAGACGTGGTCCCCAAAGACGTCAACGCGGC
CATCGCCACCATCAAGACCAAGCGCACCATCCAGTTTGTGGACTGGTGCCCGACTGGGTT
CAAGGTGGGCATCAACTACCAGCCCCCCACGGTGGTCCCAGGGGGAGACCTGGCCAAGGT
GCAGCGGGCCGTGTGCATGCTGAGCAACACCACGGCCATCGCCGAGGCCTGGGCCCGCCT
GGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTCGTGCACTGGTACGTGGGGGA
AGGCATGGAGGAGGGCGAGTTCTCGGAGGCCCGGGAGGACCTGGCGGCTCTGGAGAAAGA
TTACGAAGAGGTGGGCGTGGACTCGGTGGAAGCGGAGGCCGAGGAGGGGGAGGAGTACTG
AGCGGGAGGGCGAGGCGGCCCCCCTTCACCCTGCTCTGTAACGTTCCAGATGTGTTTACC
TATTAAAGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACACGACCCTGGAGCACTCGGACTGCGCCTTCATGGTGGACAACGAGGCCATCTACGA
CATCTGTCGGCGCAACCTGGACATCGAGCGGCCCACCTACACCAACCTCAATCGTCTGAT
CGGGCAGATCGTGTCCTCCATCACAGCCTCCCTGCGCTTCGACGGGGCCCTCAACGTGGA
CCTGACGGAGTTCCAGACCAACCTGGTCCCCTACCCCCGCATCCACTTCCCCCTGGCCAC
CTACGCCCCGGTCATCTCGGCCGAGAAGGCCTACCACGAGCAGCTGTCTGTGGCCGAGAT
CACCAACGCCTGCTTCGAGCCGGCCAACCAGATGGTCAAGTGTGACCCTCGCCACGGCAA
GTACATGGCCTGCTGCATGCTGTACAGGGGAGACGTGGTCCCCAAAGACGTCAACGCGGC
CATCGCCACCATCAAGACCAAGCGCACCATCCAGTTTGTGGACTGGTGCCCGACTGGGTT
CAAGGTGGGCATCAACTACCAGCCCCCCACGGTGGTCCCAGGGGGAGACCTGGCCAAGGT
GCAGCGGGCCGTGTGCATGCTGAGCAACACCACGGCCATCGCCGAGGCCTGGGCCCGCCT
GGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTCGTGCACTGGTACGTGGGGGA
AGGCATGGAGGAGGGCGAGTTCTCGGAGGCCCGGGAGGACCTGGCGGCTCTGGAGAAAGA
TTACGAAGAGGTGGGCGTGGACTCGGTGGAAGCGGAGGCCGAGGAGGGGGAGGAGTACTG
AGCGGGAGGGCGAGGCGGCCCCCCTTCACCCTGCTCTGTAACGTTCCAGATGTGTTTACC
TATTAAAGTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4929136|gb|AAD33872.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4929136|gb|AAD33872.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               2-121, - strand, RNAz p=0.520376
               

               
               202-441, - strand, RNAz p=0.928502
               

               
               522-640, - strand, RNAz p=0.562708

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-121, - strand, RNAz p=0.520376
               

               
               202-441, - strand, RNAz p=0.928502
               

               
               522-640, - strand, RNAz p=0.562708

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-778, gnl|bosTau2|chr10 (46593216-46592443)
               

               
               2-778, gnl|Hg17|chr12 (47865842-47865063)
               

               
               2-778, gnl|Mm7|chr15 (98936076-98935296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-778, gnl|bosTau2|chr10 (46593216-46592443)
               

               
               2-778, gnl|Hg17|chr12 (47865842-47865063)
               

               
               2-778, gnl|Mm7|chr15 (98936076-98935296)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               cly (0.120642)

	2-121, - strand, RNAz p=0.520376
	202-441, - strand, RNAz p=0.928502
	522-640, - strand, RNAz p=0.562708

	2-778, gnl\|bosTau2\|chr10 (46593216-46592443)
	2-778, gnl\|Hg17\|chr12 (47865842-47865063)
	2-778, gnl\|Mm7\|chr15 (98936076-98935296)