Non-Coding RNA Search

Ss1.1-Mixn-0017b05.5

Sequence:


               
               CTCGCCGCCTGGGTAGCGGTCGGACCGGGGCACTAACCGCGTGTGCTTCCACTTGGAAGC
TTTTCTGCACAACTCGGCGAGGGAACCGAGCGCCCCTCAGTTTACCGGCTTGGCCCCAGG
ATGGCCCCCAAACTCCCAGGCTCTGTGGAGGAGCTTCGCGCCGCCGGCAACCAAAGCTTT
CGCAACGGCCAGTTCGCCGAGGCCGCCACGCTCTACAGTCGCGCGCTGCGGATGCTGCAG
GCGCAAGGTTCTTTGGACCCAGAAAAAGAAAGTGTCCTCTTCTCCAACCGAGCCGCATGC
CACCTGAAGGATGGGAACTGTGTAGACTGCATCAAGGACTGCACTTCAGCACTGGCCTTG
GTTCCCTTTAGCATGAAGCCCCTGCTGCGGCGAGCATCGGCCTACGAGGCTCTGGAGAAG
TACCCACTGGCTTATGTTGACTACGTGACTGTGCTGCAGATCGACGACGGTGTGACATCA
GCTCTGGAAGGCAGCAGCAGGATGACGAGAGCTCTCATGGACTCCTTTGGGTCCGAGTGG
CGCCTGAAGCTGCCCTCTATCCCCTTGGTGCCTGTTTCAGCTCAGAAGAGGTGGGAGTGT
TTGCCTTCGGAAAACCGCAAAGAGACAGCCAAAAGCAAATCCAAAGAAACCACAACCGCC
AAGAGCAGAGTGCCTTCTGCTGGGGATGTGGAGAGAGCCAGAGTTCTGAAGGAGGAAGGC
AATGAGCTTGTGAAGAAGGGGAACCATAAGCAAGCGATTGAGAAGTACAGTGAGAGCCTC
TGGTTTAGTAACGTGGAATCCGCCACGTACAGCAACAGAGCGCTCTGCCATCTGGTGCTG
AAGCAGTACAAGGAGGCCGTGAAGGACTGCACCGAAGCCCTCAGGCTGGACGGAAGAAAC
GTGAAGGCCTTTTACAGACGGGCTCAAGCCTACAAGGCACTCAAGGACTATACATCCAGC
TTTGCAGACATCAACAGCCTCCTGCAGATTGAGCCCAGGAACGGCCCTGCACAGAAGTTG
CGGCAGGAAGTCAACCGGAGCTTAAACTAAAATCCCAAAAGGGCAGTGGGACACCTGCCT
GACCTCCTTCCTGTGCCTGCTCGTGGGACCTGACGTGCCCCAGAGCTCCCTCCTCAGACC
TGATGGCCTCCTGCCCATTTAGAGGCTTTGGTTGTTCAAGCTAAGCTCAGCGTAGCCAAA
AATCAGACGTTTGTTGAAAAGGTCTCTCCCTGTTCTGCATCCCCCTGTGCTGCGGACAGC
TAGTGGGTCACACAGATGGGTCCTTGTCAGCCAAGCATTTGGCTCTGGCTCTATCTCTAC
CCAGCATGCTCCAGCCTGAGTGCTGCACTTCCAGTATCACCAGGCCACCTCACCACAGTC
CATCTGAGCAACCCAAGCTGGGGTGGGGTTGGTGGCTGGAACACCGTGGCCGCCTTCACC
CAAAGCAGCCTGTTGAGCTGGTTCTCCAGGGCTGCTGTCCCAGCCCTGTCCTTGGCCCAT
GCTTCGTGCTGTGAACCCCAGTGCCTTTTGGCTGAGCCCTCCTTTGGTGGGGATGCAGAA
CCTGACCCTTGGCTAGTTTTGTGGCTCTGTGCTGCCACCCCCCGTGCGGAGGTACCTAAG
CTGTTTCAAGAGCCCAGAGGGGTGGCTGCTGCTCCCGAAGGTGGGATGGGAGAAGGGCCC
TCTTGAAGTCAGTGTCCCATTCCCAGCAGGGACTTGCCTTTTGACCCCAGTGGTGGCCCC
TCTGGGCTTCTTAGGTTCGTTATAATATGTTGATGTTAATTTGAACTGAACTGAGTTGTT
GAGATGTGGGTTTCCACTGTTGAAGTAAACATCTTCTCCGCCCGAAAATATTGTACTTTT
GTTTGTGCCTTTCCAGCTTTGGTTCATTTTGGAACATGGCTGTAAAAAACCTGAAAAAAA
ACAAAACAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGCCGCCTGGGTAGCGGTCGGACCGGGGCACTAACCGCGTGTGCTTCCACTTGGAAGC
TTTTCTGCACAACTCGGCGAGGGAACCGAGCGCCCCTCAGTTTACCGGCTTGGCCCCAGG
ATGGCCCCCAAACTCCCAGGCTCTGTGGAGGAGCTTCGCGCCGCCGGCAACCAAAGCTTT
CGCAACGGCCAGTTCGCCGAGGCCGCCACGCTCTACAGTCGCGCGCTGCGGATGCTGCAG
GCGCAAGGTTCTTTGGACCCAGAAAAAGAAAGTGTCCTCTTCTCCAACCGAGCCGCATGC
CACCTGAAGGATGGGAACTGTGTAGACTGCATCAAGGACTGCACTTCAGCACTGGCCTTG
GTTCCCTTTAGCATGAAGCCCCTGCTGCGGCGAGCATCGGCCTACGAGGCTCTGGAGAAG
TACCCACTGGCTTATGTTGACTACGTGACTGTGCTGCAGATCGACGACGGTGTGACATCA
GCTCTGGAAGGCAGCAGCAGGATGACGAGAGCTCTCATGGACTCCTTTGGGTCCGAGTGG
CGCCTGAAGCTGCCCTCTATCCCCTTGGTGCCTGTTTCAGCTCAGAAGAGGTGGGAGTGT
TTGCCTTCGGAAAACCGCAAAGAGACAGCCAAAAGCAAATCCAAAGAAACCACAACCGCC
AAGAGCAGAGTGCCTTCTGCTGGGGATGTGGAGAGAGCCAGAGTTCTGAAGGAGGAAGGC
AATGAGCTTGTGAAGAAGGGGAACCATAAGCAAGCGATTGAGAAGTACAGTGAGAGCCTC
TGGTTTAGTAACGTGGAATCCGCCACGTACAGCAACAGAGCGCTCTGCCATCTGGTGCTG
AAGCAGTACAAGGAGGCCGTGAAGGACTGCACCGAAGCCCTCAGGCTGGACGGAAGAAAC
GTGAAGGCCTTTTACAGACGGGCTCAAGCCTACAAGGCACTCAAGGACTATACATCCAGC
TTTGCAGACATCAACAGCCTCCTGCAGATTGAGCCCAGGAACGGCCCTGCACAGAAGTTG
CGGCAGGAAGTCAACCGGAGCTTAAACTAAAATCCCAAAAGGGCAGTGGGACACCTGCCT
GACCTCCTTCCTGTGCCTGCTCGTGGGACCTGACGTGCCCCAGAGCTCCCTCCTCAGACC
TGATGGCCTCCTGCCCATTTAGAGGCTTTGGTTGTTCAAGCTAAGCTCAGCGTAGCCAAA
AATCAGACGTTTGTTGAAAAGGTCTCTCCCTGTTCTGCATCCCCCTGTGCTGCGGACAGC
TAGTGGGTCACACAGATGGGTCCTTGTCAGCCAAGCATTTGGCTCTGGCTCTATCTCTAC
CCAGCATGCTCCAGCCTGAGTGCTGCACTTCCAGTATCACCAGGCCACCTCACCACAGTC
CATCTGAGCAACCCAAGCTGGGGTGGGGTTGGTGGCTGGAACACCGTGGCCGCCTTCACC
CAAAGCAGCCTGTTGAGCTGGTTCTCCAGGGCTGCTGTCCCAGCCCTGTCCTTGGCCCAT
GCTTCGTGCTGTGAACCCCAGTGCCTTTTGGCTGAGCCCTCCTTTGGTGGGGATGCAGAA
CCTGACCCTTGGCTAGTTTTGTGGCTCTGTGCTGCCACCCCCCGTGCGGAGGTACCTAAG
CTGTTTCAAGAGCCCAGAGGGGTGGCTGCTGCTCCCGAAGGTGGGATGGGAGAAGGGCCC
TCTTGAAGTCAGTGTCCCATTCCCAGCAGGGACTTGCCTTTTGACCCCAGTGGTGGCCCC
TCTGGGCTTCTTAGGTTCGTTATAATATGTTGATGTTAATTTGAACTGAACTGAGTTGTT
GAGATGTGGGTTTCCACTGTTGAAGTAAACATCTTCTCCGCCCGAAAATATTGTACTTTT
GTTTGTGCCTTTCCAGCTTTGGTTCATTTTGGAACATGGCTGTAAAAAACCTGAAAAAAA
ACAAAACAACAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53GH9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53GH9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1492-1641, - strand, RNAz p=0.994993

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1492-1641, - strand, RNAz p=0.994993

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               91-249, gnl|bosTau2|chr13 (55805471-55805628)
               

               
               91-249, gnl|Hg17|chr20 (43022406-43022260)
               

               
               91-249, gnl|Mm7|chr2 (163811948-163811801)
               


               
               498-670, gnl|bosTau2|chr13 (55814341-55814513)
               

               
               498-670, gnl|Hg17|chr20 (43014060-43013888)
               

               
               498-670, gnl|Mm7|chr2 (163801901-163801729)
               


               
               944-1909, gnl|bosTau2|chr13 (55824377-55825385)
               

               
               944-1909, gnl|Hg17|chr20 (43005270-43004211)
               

               
               944-1909, gnl|Mm7|chr2 (163795399-163794446)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-249, gnl|bosTau2|chr13 (55805471-55805628)
               

               
               91-249, gnl|Hg17|chr20 (43022406-43022260)
               

               
               91-249, gnl|Mm7|chr2 (163811948-163811801)
               


               
               498-670, gnl|bosTau2|chr13 (55814341-55814513)
               

               
               498-670, gnl|Hg17|chr20 (43014060-43013888)
               

               
               498-670, gnl|Mm7|chr2 (163801901-163801729)
               


               
               944-1909, gnl|bosTau2|chr13 (55824377-55825385)
               

               
               944-1909, gnl|Hg17|chr20 (43005270-43004211)
               

               
               944-1909, gnl|Mm7|chr2 (163795399-163794446)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	91-249, gnl\|bosTau2\|chr13 (55805471-55805628)
	91-249, gnl\|Hg17\|chr20 (43022406-43022260)
	91-249, gnl\|Mm7\|chr2 (163811948-163811801)

	498-670, gnl\|bosTau2\|chr13 (55814341-55814513)
	498-670, gnl\|Hg17\|chr20 (43014060-43013888)
	498-670, gnl\|Mm7\|chr2 (163801901-163801729)

	944-1909, gnl\|bosTau2\|chr13 (55824377-55825385)
	944-1909, gnl\|Hg17\|chr20 (43005270-43004211)
	944-1909, gnl\|Mm7\|chr2 (163795399-163794446)

	cli (0.152812)
	cag (0.151194)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	cty (0.10408)