Non-Coding RNA Search

Ss1.1-Mixn-0017d14.5

Sequence:


               
               CAGAGAGGGTGGGGGGAGGCGGGGTGGGAGGAGGTGCAGGGTGGAGAGAACCACCTTTTG
CTCAATCGATAAGAGTCCGTTTGTGTCTTAAATGCTGACTGCAACCTTTGTCATGGTTGG
TTGGAATTTCTTCCTGTTAATTATGGCCTATAGGTCAGAGATATAGGAAGTCATATTTTG
GTGGCTAAGTTTTTCTAAGAAAGATAACTGAAAAGATTAAACATTAAAAAAAAGTGTTAA
TGCTTCCAAACCGTAGCTGTCATGGGGCAATTTCCTTATTTATAACGTGCAACACGGTGG
ATTTACGGCTCTAAGGAACGAGTGCTTTGGAGTTTAGCCCCGAGGGCTGACCACACAACT
GGAATGTGATTGCCTTCTCCAGATTCAGAGGGGCCCTGTCTCTATGGAGCACAGCTAGAG
GTTTTCAAATAACTTGTTAAAAACATGCTTTCAGTCATGTAGAGGCTAAGATTTTTTAAA
GATTTAGGTAAGGAAAAGCTGACAGGAAGCCCCGGGGAAGAATTTTTTGAGAACATATGT
ATGCTATTAAAATACATTGAGATTAATAAATGAAAATGCTTAAAGGTGACAGCAAATATA
GAGAAACTTATGATGGTGGCATTGCCGTCTGTAAATATAGAGTAAAAGCTATTTGATTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGAGGGTGGGGGGAGGCGGGGTGGGAGGAGGTGCAGGGTGGAGAGAACCACCTTTTG
CTCAATCGATAAGAGTCCGTTTGTGTCTTAAATGCTGACTGCAACCTTTGTCATGGTTGG
TTGGAATTTCTTCCTGTTAATTATGGCCTATAGGTCAGAGATATAGGAAGTCATATTTTG
GTGGCTAAGTTTTTCTAAGAAAGATAACTGAAAAGATTAAACATTAAAAAAAAGTGTTAA
TGCTTCCAAACCGTAGCTGTCATGGGGCAATTTCCTTATTTATAACGTGCAACACGGTGG
ATTTACGGCTCTAAGGAACGAGTGCTTTGGAGTTTAGCCCCGAGGGCTGACCACACAACT
GGAATGTGATTGCCTTCTCCAGATTCAGAGGGGCCCTGTCTCTATGGAGCACAGCTAGAG
GTTTTCAAATAACTTGTTAAAAACATGCTTTCAGTCATGTAGAGGCTAAGATTTTTTAAA
GATTTAGGTAAGGAAAAGCTGACAGGAAGCCCCGGGGAAGAATTTTTTGAGAACATATGT
ATGCTATTAAAATACATTGAGATTAATAAATGAAAATGCTTAAAGGTGACAGCAAATATA
GAGAAACTTATGATGGTGGCATTGCCGTCTGTAAATATAGAGTAAAAGCTATTTGATTCA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr5 (51285912-51286579)
               

               
               1-660, gnl|Hg17|chr12 (26383333-26382664)
               

               
               1-660, gnl|Mm7|chr6 (146189734-146189110)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr5 (51285912-51286579)
               

               
               1-660, gnl|Hg17|chr12 (26383333-26382664)
               

               
               1-660, gnl|Mm7|chr6 (146189734-146189110)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               med (0.116252)

	1-660, gnl\|bosTau2\|chr5 (51285912-51286579)
	1-660, gnl\|Hg17\|chr12 (26383333-26382664)
	1-660, gnl\|Mm7\|chr6 (146189734-146189110)