Ss1.1-Mixn-0017d20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATTCAGGAGCACATCCAATTATAAATGATTGTTAGGAAAATCATATAAAACAATGGAA TACATAAAAGTGTCAAGAGTAATTGTCAGGGTGCGAAATTCCTTGGTGGCCAGATGCCCA TGGCAAGCAGAAATTATCCTGGCAGCATCACTAAGAGGTCGATGTCCACAGAAGATTCTC CAGGGATGCGAGCAGCATGGGCAGGTGGAGAATGTGAATTTCATACCCTGATTCATAGTT TTCACAATTCCATGTGCAATTTCAGAAAGATTCATCATTTACTGCTGACATGTCGCCCTT TGGCGTGGAGGAACGGGAGGAGCCCTTGTCTGTGCTCTCCGACCCCGAGCTGCTCTGGTT CTGCTGTTCTGACCCTGCACTGGAGGTCACTGTGGATGAGGATGTCGAGGAGGAGCGAGT CTTTTCCTTAAAGTCTGTGATAATGACGGTGACGTTGCCCACAGTTACTGCCAACTGCTG TGCAGTGCTCCTGTCCACGTTTTTCAGCCGGGGCCTTGAAGTGTGATTCGTTTCACTGGT CTTTGTTGTGGCATTTGCTGACTGTATACTGTTTGCTTCACTAGGTGGATCTTTCAGAAT ATCAGACTTTGGTTTTGTTTTCTTGTTGGTATTTTTCTTGGTAACACTAGGACTAATTTC CTTATCTTTCTCTGGTTTCTCTTTATCTTGCTTTTCAACTTTCTCCTTCTTCTCCTTTTT AGGGGGTGGTGGAGTGGCGTACTGTTGGGCCACTTGCTGTGCCACCAGCTGAGAATTGAT CCGAGGTTTTCTGGTGGAGGTGCCTTTCCTCACATCGCAGATGCTGCATTTAAAGGCTTC GGCGCTGTTTCTGAAGGTGCAGACGCTACAATCCCAAAAGCCTTCGTCTGCGGCAGGTTT TGCTTGTCTTTTTGGCCTGGTCGGGCTCTTCTTGTCGCCCATGGTCATGGATGGGCTGTA CCCCCGCCCCCCCCAAAGCAGAAACCGGCGCCGCTCGGAGGAGAAACGCCGTCCGGGGAG TCGTCGCGGACCGGCCCCCCTCCCTCCCCCGCGCCCGCCCGCCCTCAGCCGCTGGGGCTC TAGCTCCGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCAGTCTCCGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATTCAGGAGCACATCCAATTATAAATGATTGTTAGGAAAATCATATAAAACAATGGAA TACATAAAAGTGTCAAGAGTAATTGTCAGGGTGCGAAATTCCTTGGTGGCCAGATGCCCA TGGCAAGCAGAAATTATCCTGGCAGCATCACTAAGAGGTCGATGTCCACAGAAGATTCTC CAGGGATGCGAGCAGCATGGGCAGGTGGAGAATGTGAATTTCATACCCTGATTCATAGTT TTCACAATTCCATGTGCAATTTCAGAAAGATTCATCATTTACTGCTGACATGTCGCCCTT TGGCGTGGAGGAACGGGAGGAGCCCTTGTCTGTGCTCTCCGACCCCGAGCTGCTCTGGTT CTGCTGTTCTGACCCTGCACTGGAGGTCACTGTGGATGAGGATGTCGAGGAGGAGCGAGT CTTTTCCTTAAAGTCTGTGATAATGACGGTGACGTTGCCCACAGTTACTGCCAACTGCTG TGCAGTGCTCCTGTCCACGTTTTTCAGCCGGGGCCTTGAAGTGTGATTCGTTTCACTGGT CTTTGTTGTGGCATTTGCTGACTGTATACTGTTTGCTTCACTAGGTGGATCTTTCAGAAT ATCAGACTTTGGTTTTGTTTTCTTGTTGGTATTTTTCTTGGTAACACTAGGACTAATTTC CTTATCTTTCTCTGGTTTCTCTTTATCTTGCTTTTCAACTTTCTCCTTCTTCTCCTTTTT AGGGGGTGGTGGAGTGGCGTACTGTTGGGCCACTTGCTGTGCCACCAGCTGAGAATTGAT CCGAGGTTTTCTGGTGGAGGTGCCTTTCCTCACATCGCAGATGCTGCATTTAAAGGCTTC GGCGCTGTTTCTGAAGGTGCAGACGCTACAATCCCAAAAGCCTTCGTCTGCGGCAGGTTT TGCTTGTCTTTTTGGCCTGGTCGGGCTCTTCTTGTCGCCCATGGTCATGGATGGGCTGTA CCCCCGCCCCCCCCAAAGCAGAAACCGGCGCCGCTCGGAGGAGAAACGCCGTCCGGGGAG TCGTCGCGGACCGGCCCCCCTCCCTCCCCCGCGCCCGCCCGCCCTCAGCCGCTGGGGCTC TAGCTCCGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCAGTCTCCGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-521, gnl|bosTau2|chr22 (20419592-20420113) | |
| 1-521, gnl|Hg17|chr3 (72509965-72510485) | |
| 1-521, gnl|Mm7|chr6 (100319991-100320506) | |
| 614-792, gnl|bosTau2|chr22 (20420839-20421017) | |
| 614-792, gnl|Hg17|chr3 (72511092-72511270) | |
| 614-792, gnl|Mm7|chr6 (100321137-100321315) | |
| 793-919, gnl|bosTau2|chr5 (27505355-27505229) | |
| 793-919, gnl|canFam2|chr27 (14687677-14687499) | |
| 793-919, gnl|danRer3|chr4 (11243186-11243000) | |
| 793-919, gnl|dasNov1|scaffold_43968 (11343-11515) | |
| 793-919, gnl|echTel1|scaffold_108968 (118-7) | |
| 793-919, gnl|fr1|chrUn (119465115-119465311) | |
| 793-919, gnl|galGal2|chr1 (26455632-26455782) | |
| 793-919, gnl|hg17|chr12 (40917663-40917841) | |
| 793-919, gnl|Hg17|chr12 (40917670-40917796) | |
| 793-919, gnl|loxAfr1|scaffold_7296 (61635-61768) | |
| 793-919, gnl|mm7|chr15 (93416703-93416880) | |
| 793-919, gnl|Mm7|chr15 (93416710-93416836) | |
| 793-919, gnl|monDom2|scaffold_133 (487910-487731) | |
| 793-919, gnl|oryCun1|scaffold_111043 (4270-4094) | |
| 793-919, gnl|panTro1|chr10 (41512394-41512572) | |
| 793-919, gnl|rheMac2|chr11 (39158194-39158372) | |
| 793-919, gnl|rn3|chr7 (131901691-131901868) | |
| 793-919, gnl|tetNig1|chr19 (4021343-4021145) | |
| 793-919, gnl|xenTro1|scaffold_66 (1233107-1233289) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-521, gnl|bosTau2|chr22 (20419592-20420113) | |
| 1-521, gnl|Hg17|chr3 (72509965-72510485) | |
| 1-521, gnl|Mm7|chr6 (100319991-100320506) | |
| 614-792, gnl|bosTau2|chr22 (20420839-20421017) | |
| 614-792, gnl|Hg17|chr3 (72511092-72511270) | |
| 614-792, gnl|Mm7|chr6 (100321137-100321315) | |
| 793-919, gnl|bosTau2|chr5 (27505355-27505229) | |
| 793-919, gnl|canFam2|chr27 (14687677-14687499) | |
| 793-919, gnl|danRer3|chr4 (11243186-11243000) | |
| 793-919, gnl|dasNov1|scaffold_43968 (11343-11515) | |
| 793-919, gnl|echTel1|scaffold_108968 (118-7) | |
| 793-919, gnl|fr1|chrUn (119465115-119465311) | |
| 793-919, gnl|galGal2|chr1 (26455632-26455782) | |
| 793-919, gnl|hg17|chr12 (40917663-40917841) | |
| 793-919, gnl|Hg17|chr12 (40917670-40917796) | |
| 793-919, gnl|loxAfr1|scaffold_7296 (61635-61768) | |
| 793-919, gnl|mm7|chr15 (93416703-93416880) | |
| 793-919, gnl|Mm7|chr15 (93416710-93416836) | |
| 793-919, gnl|monDom2|scaffold_133 (487910-487731) | |
| 793-919, gnl|oryCun1|scaffold_111043 (4270-4094) | |
| 793-919, gnl|panTro1|chr10 (41512394-41512572) | |
| 793-919, gnl|rheMac2|chr11 (39158194-39158372) | |
| 793-919, gnl|rn3|chr7 (131901691-131901868) | |
| 793-919, gnl|tetNig1|chr19 (4021343-4021145) | |
| 793-919, gnl|xenTro1|scaffold_66 (1233107-1233289) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cki (0.165235) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| jej (0.0989218) |