Ss1.1-Mixn-0017e18.5
|
ATCCCCAGCGAGCGGAGGACGCACAGTATGACCTGCGGGAGCCCGCAGCTACCCCACATG
GAGGGACGAAGGCCGGCCGGACCTCNTGCCCTGCACACCACCCTCTTTGAGGAGGCCACC
ACCGCCTCCATTGCCACGACCCTGTCCTCCACATCCCTCTCCATCCNTGAGCGGTCCCCT
TCAGAGACTTCAGAGCAGCCTCGGTACAGGCGGCACACACAGTCCTCTGGGCAGGATGGC
CGGCCCCAGGAGGAGGCACATGCAGAGGAGGACCTACAGCAGATCACTGTGCAGGTGGAG
CCTGCATGCAATGTGGAGATAGTGGTCCCCAAGGAGGAGGATGTGGGGGAGGGGGCATCC
CCAGCCTGTGCCTCTGCTGCCATCGAAGCAGAAACTGCCAGCCAGGCCTCCGAGCCCGCC
AGCCAGGCCTCAGACGAGGAGGACGCGCCCGCCACGGACATCTACTTTTAATTCCTATGC
AGTCACCAACCTGGAGTGGAGCGCCCGCTGCTGCCCGGCCGCTTCCTGGAGGCGCTGCCC
TCCCTGCTCAGCCCAGAGCTCAGGAGACGCCCACTTGGCTGCCGGCCCTCGCTCGCCCTC
GTCCTCCCCTCAACGACGCCGAAGCTCCGGGCCGCAGAGCGATACCGAACTGGTCGGCAT
GTCCGGCCCCCTCTCCCCGTCAACTACCTACGCCTGATACTGTGAACGCTCCTGAGTTTC
CAATCATGTATTTATTTTGGGTCTTTATTCTTTGCACAGAGATGGCAGCACACATGTGTT
TCCTTAGAAAAAGAAAAAAAAAAAACCCACAATGGAAAAGAAGAAACTAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATCCCCAGCGAGCGGAGGACGCACAGTATGACCTGCGGGAGCCCGCAGCTACCCCACATG
GAGGGACGAAGGCCGGCCGGACCTCNTGCCCTGCACACCACCCTCTTTGAGGAGGCCACC
ACCGCCTCCATTGCCACGACCCTGTCCTCCACATCCCTCTCCATCCNTGAGCGGTCCCCT
TCAGAGACTTCAGAGCAGCCTCGGTACAGGCGGCACACACAGTCCTCTGGGCAGGATGGC
CGGCCCCAGGAGGAGGCACATGCAGAGGAGGACCTACAGCAGATCACTGTGCAGGTGGAG
CCTGCATGCAATGTGGAGATAGTGGTCCCCAAGGAGGAGGATGTGGGGGAGGGGGCATCC
CCAGCCTGTGCCTCTGCTGCCATCGAAGCAGAAACTGCCAGCCAGGCCTCCGAGCCCGCC
AGCCAGGCCTCAGACGAGGAGGACGCGCCCGCCACGGACATCTACTTTTAATTCCTATGC
AGTCACCAACCTGGAGTGGAGCGCCCGCTGCTGCCCGGCCGCTTCCTGGAGGCGCTGCCC
TCCCTGCTCAGCCCAGAGCTCAGGAGACGCCCACTTGGCTGCCGGCCCTCGCTCGCCCTC
GTCCTCCCCTCAACGACGCCGAAGCTCCGGGCCGCAGAGCGATACCGAACTGGTCGGCAT
GTCCGGCCCCCTCTCCCCGTCAACTACCTACGCCTGATACTGTGAACGCTCCTGAGTTTC
CAATCATGTATTTATTTTGGGTCTTTATTCTTTGCACAGAGATGGCAGCACACATGTGTT
TCCTTAGAAAAAGAAAAAAAAAAAACCCACAATGGAAAAGAAGAAACTAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
242-356, DB820470 full-length enriched swine cDNA library, adult uterus Sus
(dbj|DB820470.1|), blast E-value=0, identity=100% |
|
242-341, DKFZp686G0528_r1 686 (synonym (emb|AL703970.1|), blast
E-value=0.000000000002, identity=85% |
|
242-341, 601482235F1 NIH_MGC_68 Homo sapiens cDNA clone IMAGE (gb|BE789406.1|),
blast E-value=0.000000000002, identity=85% |
|
242-341, 602300980F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb|BG034051.1|),
blast E-value=0.000000000002, identity=85% |
|
242-341, LIB3581-026-Q6-K1-C11 LIB3581 Canis familiaris cDNA clone
(gb|DN355722.1|), blast E-value=2e-24, identity=90% |
|
242-341, GL-Cf-11374 GLGC-LIB0001-cf Canis familiaris Normalized Mixed
(gb|DN754578.1|), blast E-value=2e-24, identity=90% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
242-356, DB820470 full-length enriched swine cDNA library, adult uterus Sus
(dbj|DB820470.1|), blast E-value=0, identity=100% |
|
242-341, DKFZp686G0528_r1 686 (synonym (emb|AL703970.1|), blast
E-value=0.000000000002, identity=85% |
|
242-341, 601482235F1 NIH_MGC_68 Homo sapiens cDNA clone IMAGE (gb|BE789406.1|),
blast E-value=0.000000000002, identity=85% |
|
242-341, 602300980F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb|BG034051.1|),
blast E-value=0.000000000002, identity=85% |
|
242-341, LIB3581-026-Q6-K1-C11 LIB3581 Canis familiaris cDNA clone
(gb|DN355722.1|), blast E-value=2e-24, identity=90% |
|
242-341, GL-Cf-11374 GLGC-LIB0001-cf Canis familiaris Normalized Mixed
(gb|DN754578.1|), blast E-value=2e-24, identity=90% |
|
70-210, gnl|bosTau2|chr7 (17060583-17060442) |
|
70-210, gnl|canFam2|chr20 (58854937-58854775) |
|
70-210, gnl|danRer3|chr22 (30752024-30751871) |
|
70-210, gnl|fr1|chrUn (199767682-199767514) |
|
70-210, gnl|galGal2|chr28 (915818-915663) |
|
70-210, gnl|hg17|chr19 (3594232-3594399) |
|
70-210, gnl|Hg17|chr19 (3594381-3594240) |
|
70-210, gnl|mm7|chr10 (81105508-81105347) |
|
70-210, gnl|Mm7|chr10 (81105358-81105499) |
|
70-210, gnl|monDom2|scaffold_122 (1076015-1075858) |
|
70-210, gnl|oryCun1|scaffold_41952 (1600-1455) |
|
70-210, gnl|panTro1|chr20 (3818989-3819156) |
|
70-210, gnl|rheMac2|chr19 (3483889-3484057) |
|
70-210, gnl|rn3|chr7 (9888163-9888325) |
|
70-210, gnl|tetNig1|chr1_random (3130861-3131010) |
|
70-210, gnl|xenTro1|scaffold_910 (419744-419596) |
| |
|
242-356, gnl|bosTau2|chr7 (17059124-17059009) |
|
242-356, gnl|Hg17|chr19 (3592808-3592698) |
|
242-356, gnl|Mm7|chr10 (81105991-81106100) |
| |
|
469-828, gnl|bosTau2|chr7 (17053054-17052689) |
|
469-828, gnl|Hg17|chr19 (3584167-3583823) |
|
469-828, gnl|Mm7|chr10 (81109763-81110091) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
70-210, gnl|bosTau2|chr7 (17060583-17060442) |
|
70-210, gnl|canFam2|chr20 (58854937-58854775) |
|
70-210, gnl|danRer3|chr22 (30752024-30751871) |
|
70-210, gnl|fr1|chrUn (199767682-199767514) |
|
70-210, gnl|galGal2|chr28 (915818-915663) |
|
70-210, gnl|hg17|chr19 (3594232-3594399) |
|
70-210, gnl|Hg17|chr19 (3594381-3594240) |
|
70-210, gnl|mm7|chr10 (81105508-81105347) |
|
70-210, gnl|Mm7|chr10 (81105358-81105499) |
|
70-210, gnl|monDom2|scaffold_122 (1076015-1075858) |
|
70-210, gnl|oryCun1|scaffold_41952 (1600-1455) |
|
70-210, gnl|panTro1|chr20 (3818989-3819156) |
|
70-210, gnl|rheMac2|chr19 (3483889-3484057) |
|
70-210, gnl|rn3|chr7 (9888163-9888325) |
|
70-210, gnl|tetNig1|chr1_random (3130861-3131010) |
|
70-210, gnl|xenTro1|scaffold_910 (419744-419596) |
| |
|
242-356, gnl|bosTau2|chr7 (17059124-17059009) |
|
242-356, gnl|Hg17|chr19 (3592808-3592698) |
|
242-356, gnl|Mm7|chr10 (81105991-81106100) |
| |
|
469-828, gnl|bosTau2|chr7 (17053054-17052689) |
|
469-828, gnl|Hg17|chr19 (3584167-3583823) |
|
469-828, gnl|Mm7|chr10 (81109763-81110091) |
|
eye (0.170503) |
|
ebs (0.118301) |
|
eye (0.170503) |
|
ebs (0.118301) |
