Non-Coding RNA Search

Ss1.1-Mixn-0017e23.5

Sequence:


               
               TGTGCAATGAAATAAAGAAGTCACTGGATGAGGGTCAGAAGGTTGAGTTGGTATGATTGC
TTGGGGGAGAGGTGGCCTTCCAAAGGACTTCTCAGTGGCCCTGGCCTGTGTGAGAGAAAC
CAGGAGGACAGTTCAGCCCAGTGCTGGCACTTCCAAGGCTGGAAGACACAAGCCATAACC
CTGGTGCTGAGTTTTAGGCTTGCTGATGTTCCTGGCCTCTGAGAGCTGAGGTCTAGTCTG
TCTGTTTGGGCCCCAATTCATGGAAAAGATGAGTAGGACATCATTTCTTAGTCACCAGCT
TTGGAGTTCAACTTGCTCAGGCAATTCTGGAGAATATTGGATGGCTGCAGTAGCTATTAT
CTCTTCATATTGAGCACTGTGTCAGGCTTCTCACCACCAAAGAGCCCATAGCACCAGCTG
CGGAGACCAGAAATACTGCCTTTATTAGCCGGGGGCAGGTATGCTTTTGGTGAAGGTTGA
AAGGAGCCATGAGAAAGGATTATTAGAATTGGAAACCTGCAGTTCCAAAGACAGCAAAAC
TACAGACAGACCATAAAAAAATACCAAAATGATAACAGGCTACTGAAATAACCTGGGGAG
ATGGAACCAGGTTGTCCTCTGAAAGGCTACATCAATCACCCAAACTTCCAGGCCTCCAGT
CAAGAGGGGAAATAGTCCTTTCTGAGTATGTGGACCAGAGATAAGACTGACTGGACAAGT
AAAGGGAAAGCTGGCCATCCTTGGCACCCCACCTTTTCTCAACACATCCTTTCATCTCCT
CTGTCCTGAATAGCGTGTCCTGTGTAGGAAGTGCTTATACATATTAGCTTCCTTCCTAGG
TTTTATTGGGGGTACAAAATAAAGTCTTGTATAAGACATGGTCTCTGGCCACTGGAACTC
TGCAATTGAATAGGGGCAATAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCAATGAAATAAAGAAGTCACTGGATGAGGGTCAGAAGGTTGAGTTGGTATGATTGC
TTGGGGGAGAGGTGGCCTTCCAAAGGACTTCTCAGTGGCCCTGGCCTGTGTGAGAGAAAC
CAGGAGGACAGTTCAGCCCAGTGCTGGCACTTCCAAGGCTGGAAGACACAAGCCATAACC
CTGGTGCTGAGTTTTAGGCTTGCTGATGTTCCTGGCCTCTGAGAGCTGAGGTCTAGTCTG
TCTGTTTGGGCCCCAATTCATGGAAAAGATGAGTAGGACATCATTTCTTAGTCACCAGCT
TTGGAGTTCAACTTGCTCAGGCAATTCTGGAGAATATTGGATGGCTGCAGTAGCTATTAT
CTCTTCATATTGAGCACTGTGTCAGGCTTCTCACCACCAAAGAGCCCATAGCACCAGCTG
CGGAGACCAGAAATACTGCCTTTATTAGCCGGGGGCAGGTATGCTTTTGGTGAAGGTTGA
AAGGAGCCATGAGAAAGGATTATTAGAATTGGAAACCTGCAGTTCCAAAGACAGCAAAAC
TACAGACAGACCATAAAAAAATACCAAAATGATAACAGGCTACTGAAATAACCTGGGGAG
ATGGAACCAGGTTGTCCTCTGAAAGGCTACATCAATCACCCAAACTTCCAGGCCTCCAGT
CAAGAGGGGAAATAGTCCTTTCTGAGTATGTGGACCAGAGATAAGACTGACTGGACAAGT
AAAGGGAAAGCTGGCCATCCTTGGCACCCCACCTTTTCTCAACACATCCTTTCATCTCCT
CTGTCCTGAATAGCGTGTCCTGTGTAGGAAGTGCTTATACATATTAGCTTCCTTCCTAGG
TTTTATTGGGGGTACAAAATAAAGTCTTGTATAAGACATGGTCTCTGGCCACTGGAACTC
TGCAATTGAATAGGGGCAATAAGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-891, gnl|bosTau2|chr3 (3158472-3159351)
               

               
               1-891, gnl|Hg17|chr1 (163618232-163617354)
               

               
               1-891, gnl|Mm7|chr1 (166283305-166284173)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-891, gnl|bosTau2|chr3 (3158472-3159351)
               

               
               1-891, gnl|Hg17|chr1 (163618232-163617354)
               

               
               1-891, gnl|Mm7|chr1 (166283305-166284173)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)

	1-891, gnl\|bosTau2\|chr3 (3158472-3159351)
	1-891, gnl\|Hg17\|chr1 (163618232-163617354)
	1-891, gnl\|Mm7\|chr1 (166283305-166284173)