Ss1.1-Mixn-0017h04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCATGAATCCACTGCTGATCCTTGCTTGCATTGGAGCTGCGGTTGCTTTCCCCACGGA TGACGATGACAAGATCGTCGGGGGCTACACCTGTGCAGCAAATTCCGTTCCCTACCAGGT ATCCCTGAACTCTGGCTACCACTTCTGTGGCGGGTCCCTCATCAGTGACCAGTGGGTGGT GTCCGCCGCCCACTGCTACAAGAGCCGCATCCAGGTGAGGCTGGGAGAGAACAACATTGA CGTCCTGGAGGGCGACGAGCAGTTTATCGATGCGGCCAAGATCATCCGCCACCCCAAGTA CAACAGCTGGACCCTGGACAATGACATCTTGCTGATCAAGCTCTCCTCACCTGCGGTCCT CAATTCCCGGGTGTCCACCTTAGCCCTGCCCAGCGCCTGTGCACCTGCGGGCACCCTGTG CCTCATCTCTGGCTGGGGCAACACCCTGAGCTCCGGCGTCAACTACCCTGAGCTGCTGCA GTGCCTGGATGCCCCGCTGCTGAGTCAGGCCGAGTGTGAAGCCTCATACCCTGGAGAGAT CACCAGTAACATGGTCTGCGCCGGCTTCCTCGAGGGAGGCAAGGACTCCTGCCAGGGTGA CTCTGGTGGCCCCGTGGCCTGCAATGGACAGCTCCAGGGCATCGTCTCCTGGGGCTATGG CTGCGCCCAGAAAAACAGGCCTGGGGTCTACACCAAGGTCTGCAACTATGTGGACTGGAT TCAGCAGACCATCGCTGCCAACAGCTAAAACCCCCGCCCTCTGCCATCATTATGCTAGTA AATCGACTGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCATGAATCCACTGCTGATCCTTGCTTGCATTGGAGCTGCGGTTGCTTTCCCCACGGA TGACGATGACAAGATCGTCGGGGGCTACACCTGTGCAGCAAATTCCGTTCCCTACCAGGT ATCCCTGAACTCTGGCTACCACTTCTGTGGCGGGTCCCTCATCAGTGACCAGTGGGTGGT GTCCGCCGCCCACTGCTACAAGAGCCGCATCCAGGTGAGGCTGGGAGAGAACAACATTGA CGTCCTGGAGGGCGACGAGCAGTTTATCGATGCGGCCAAGATCATCCGCCACCCCAAGTA CAACAGCTGGACCCTGGACAATGACATCTTGCTGATCAAGCTCTCCTCACCTGCGGTCCT CAATTCCCGGGTGTCCACCTTAGCCCTGCCCAGCGCCTGTGCACCTGCGGGCACCCTGTG CCTCATCTCTGGCTGGGGCAACACCCTGAGCTCCGGCGTCAACTACCCTGAGCTGCTGCA GTGCCTGGATGCCCCGCTGCTGAGTCAGGCCGAGTGTGAAGCCTCATACCCTGGAGAGAT CACCAGTAACATGGTCTGCGCCGGCTTCCTCGAGGGAGGCAAGGACTCCTGCCAGGGTGA CTCTGGTGGCCCCGTGGCCTGCAATGGACAGCTCCAGGGCATCGTCTCCTGGGGCTATGG CTGCGCCCAGAAAAACAGGCCTGGGGTCTACACCAAGGTCTGCAACTATGTGGACTGGAT TCAGCAGACCATCGCTGCCAACAGCTAAAACCCCCGCCCTCTGCCATCATTATGCTAGTA AATCGACTGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 592-688, - strand, RNAz p=0.8319 | |
| 618-732, - strand, RNAz p=0.768232 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 592-688, - strand, RNAz p=0.8319 | |
| 618-732, - strand, RNAz p=0.768232 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 199-458, gnl|bosTau2|chr4 (60571283-60571024) | |
| 199-458, gnl|Hg17|chr7 (141977504-141977763) | |
| 199-458, gnl|Mm7|chr6 (41454918-41455178) | |
| 586-733, gnl|bosTau2|chr18 (52169091-52168940) | |
| 586-733, gnl|Hg17|chr19 (56138865-56138714) | |
| 586-733, gnl|Mm7|chr7 (40025789-40025940) | |
| 592-732, gnl|bosTau2|chr18 (52232997-52232854) | |
| 592-732, gnl|canFam2|chr1 (108738036-108737851) | |
| 592-732, gnl|dasNov1|scaffold_220193 (3386-3570) | |
| 592-732, gnl|echTel1|scaffold_131043 (1055-912) | |
| 592-732, gnl|fr1|chrUn (42732673-42732505) | |
| 592-732, gnl|hg17|chr19 (56217603-56217788) | |
| 592-732, gnl|Hg17|chr19 (56217769-56217626) | |
| 592-732, gnl|loxAfr1|scaffold_98971 (4534-4720) | |
| 592-732, gnl|mm7|chr7 (39954641-39954457) | |
| 592-732, gnl|Mm7|chr7 (39954473-39954616) | |
| 592-732, gnl|monDom2|scaffold_121 (3312717-3312906) | |
| 592-732, gnl|oryCun1|scaffold_58342 (888-1064) | |
| 592-732, gnl|panTro1|chr20 (53661588-53661773) | |
| 592-732, gnl|rheMac2|chr19 (57215898-57216083) | |
| 592-732, gnl|rn3|chr1 (94286495-94286313) | |
| 592-732, gnl|tetNig1|chr8 (5824865-5824708) | |
| 592-732, gnl|xenTro1|scaffold_1284 (19748-19928) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 199-458, gnl|bosTau2|chr4 (60571283-60571024) | |
| 199-458, gnl|Hg17|chr7 (141977504-141977763) | |
| 199-458, gnl|Mm7|chr6 (41454918-41455178) | |
| 586-733, gnl|bosTau2|chr18 (52169091-52168940) | |
| 586-733, gnl|Hg17|chr19 (56138865-56138714) | |
| 586-733, gnl|Mm7|chr7 (40025789-40025940) | |
| 592-732, gnl|bosTau2|chr18 (52232997-52232854) | |
| 592-732, gnl|canFam2|chr1 (108738036-108737851) | |
| 592-732, gnl|dasNov1|scaffold_220193 (3386-3570) | |
| 592-732, gnl|echTel1|scaffold_131043 (1055-912) | |
| 592-732, gnl|fr1|chrUn (42732673-42732505) | |
| 592-732, gnl|hg17|chr19 (56217603-56217788) | |
| 592-732, gnl|Hg17|chr19 (56217769-56217626) | |
| 592-732, gnl|loxAfr1|scaffold_98971 (4534-4720) | |
| 592-732, gnl|mm7|chr7 (39954641-39954457) | |
| 592-732, gnl|Mm7|chr7 (39954473-39954616) | |
| 592-732, gnl|monDom2|scaffold_121 (3312717-3312906) | |
| 592-732, gnl|oryCun1|scaffold_58342 (888-1064) | |
| 592-732, gnl|panTro1|chr20 (53661588-53661773) | |
| 592-732, gnl|rheMac2|chr19 (57215898-57216083) | |
| 592-732, gnl|rn3|chr1 (94286495-94286313) | |
| 592-732, gnl|tetNig1|chr8 (5824865-5824708) | |
| 592-732, gnl|xenTro1|scaffold_1284 (19748-19928) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (0.23596) |