Non-Coding RNA Search

Ss1.1-Mixn-0017h06.5

Sequence:


               
               ACATTTCGAGGAATGAGATACACGTGGAAACCCAAGCTGGACATGCTCCTTGAGAAAGGC
CGGCCCGGAGGAGTGATACCTGTCGTAGCGGTGAAAATGCAATATGAAATTTCCTAGGTG
CTATTCTAAACGGAGAGCTGTCATGCTCCCCAGTGAGGAGGGGGTTACGGTGTCTCTCAG
AAGCTCAAGTTCTCTTTGTAGGCCTTTCAGATACGCATTTTATGCTCCCCATCGGTTTGC
TCACCGACTGTGCCTCTCACCACTGGTTAAAATTGAATTCGCGCCCCGTCACAAAAGCAG
TTTCTTGATTGAACTCTTTCTGTTTTTACACTGGAATTTCTATAGTTGTCTTAAAAGCTG
CATGTCGTATCACTGTACAAAATGCTTCGGTATTGTTCATGCCCCATTCCTAGTGACGTG
TGTCGAATTTTCTCCTTTCGTTGTACAGTAACCTGGGAGGCAGGATGTCTTGCCTTGAGG
CTGCAAGAAAAGTGTATCTCTCATACCTTTTAAATTATTTCTGAACAAGTGCATGCAATG
TGTCCCCGACTTCTGTTATTTATGTGTATGTTTTATTATTCAAGGTGTGTGCACTTTTAA
GAAGCAGAATTTCTATTTTTATGTTTCAAACGTTTTATTTCTGGAACGGTTGATTATACA
GTAATACAGTTGGAATTAAGAAAAAAGTGGAAAATGTAACAAAATATAATAAATTTATTA
CATGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTTCGAGGAATGAGATACACGTGGAAACCCAAGCTGGACATGCTCCTTGAGAAAGGC
CGGCCCGGAGGAGTGATACCTGTCGTAGCGGTGAAAATGCAATATGAAATTTCCTAGGTG
CTATTCTAAACGGAGAGCTGTCATGCTCCCCAGTGAGGAGGGGGTTACGGTGTCTCTCAG
AAGCTCAAGTTCTCTTTGTAGGCCTTTCAGATACGCATTTTATGCTCCCCATCGGTTTGC
TCACCGACTGTGCCTCTCACCACTGGTTAAAATTGAATTCGCGCCCCGTCACAAAAGCAG
TTTCTTGATTGAACTCTTTCTGTTTTTACACTGGAATTTCTATAGTTGTCTTAAAAGCTG
CATGTCGTATCACTGTACAAAATGCTTCGGTATTGTTCATGCCCCATTCCTAGTGACGTG
TGTCGAATTTTCTCCTTTCGTTGTACAGTAACCTGGGAGGCAGGATGTCTTGCCTTGAGG
CTGCAAGAAAAGTGTATCTCTCATACCTTTTAAATTATTTCTGAACAAGTGCATGCAATG
TGTCCCCGACTTCTGTTATTTATGTGTATGTTTTATTATTCAAGGTGTGTGCACTTTTAA
GAAGCAGAATTTCTATTTTTATGTTTCAAACGTTTTATTTCTGGAACGGTTGATTATACA
GTAATACAGTTGGAATTAAGAAAAAAGTGGAAAATGTAACAAAATATAATAAATTTATTA
CATGAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-725, gnl|bosTau2|chr25 (19039407-19038686)
               

               
               1-725, gnl|Hg17|chr16 (22980958-22980240)
               

               
               1-725, gnl|Mm7|chr7 (117565010-117564317)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-725, gnl|bosTau2|chr25 (19039407-19038686)
               

               
               1-725, gnl|Hg17|chr16 (22980958-22980240)
               

               
               1-725, gnl|Mm7|chr7 (117565010-117564317)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               spc (0.340097)
               

               
               pan (0.23596)
               

               
               cut (0.169924)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.340097)
               

               
               pan (0.23596)
               

               
               cut (0.169924)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

	1-725, gnl\|bosTau2\|chr25 (19039407-19038686)
	1-725, gnl\|Hg17\|chr16 (22980958-22980240)
	1-725, gnl\|Mm7\|chr7 (117565010-117564317)

	spc (0.340097)
	pan (0.23596)
	cut (0.169924)
	pla (0.133672)
	ova (0.129132)
	sug (0.127291)