Non-Coding RNA Search

Ss1.1-Mixn-0017h16.5

Sequence:


               
               CCTCTTCCCTCTCCACACCCTCCACCCCCTTCCTCTTCCTGCCTCCTCATCTCCCCTCTG
CATCCTCTCCTCCACCCTCCTCCACCGTTTATTCTGCAAAAACTCCAGCACTTAGATCAG
GCTGGGGGAGGGGAGCGGTGTCTGGAGAGGGCTCCCTAGCCCGGGCTCGCGACTGTTCTC
TGCAGGGACTACCCAGGCCCAGACACCCCCGGGGTGCCTCGGGGTCGCAGAGCTGGCAAG
CCGAGCCTCGTTTGTAGATTTGTGCAGGGGTGGCGGGTACTGTTCCGAACAAGCACCTGG
TAGAAGGGAGGGGCGAGGCTCTCGAACCCTCCCCGGTCGGCCCGAGCTGACCTGCCCCGC
CTGGGCTTTTTAACCCAGTCGGTTTGTTAAAGGCGTCGCGGCTGGAGTCTTTCACGTGCT
TTGTAACTGTAAGAACAGAAAAAATTGGACCAAAGCTCCCAGCTGCAGGGAGCAAAGAAG
GGGCGGAGAGAGCTGCGATTATTTTCTAAGAGGACGGAGAGAGGTTTGTGCACGCGACAG
TTCACTGGGGAGGGCAGGGTCTGACCACAACGCGGTTCGGAGTTGGTTTGGTTTTGGTTT
TTTTGTGTTTTTTTTAATATAAAAAAAAGCGTAGGGAAAAAACCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTTCCCTCTCCACACCCTCCACCCCCTTCCTCTTCCTGCCTCCTCATCTCCCCTCTG
CATCCTCTCCTCCACCCTCCTCCACCGTTTATTCTGCAAAAACTCCAGCACTTAGATCAG
GCTGGGGGAGGGGAGCGGTGTCTGGAGAGGGCTCCCTAGCCCGGGCTCGCGACTGTTCTC
TGCAGGGACTACCCAGGCCCAGACACCCCCGGGGTGCCTCGGGGTCGCAGAGCTGGCAAG
CCGAGCCTCGTTTGTAGATTTGTGCAGGGGTGGCGGGTACTGTTCCGAACAAGCACCTGG
TAGAAGGGAGGGGCGAGGCTCTCGAACCCTCCCCGGTCGGCCCGAGCTGACCTGCCCCGC
CTGGGCTTTTTAACCCAGTCGGTTTGTTAAAGGCGTCGCGGCTGGAGTCTTTCACGTGCT
TTGTAACTGTAAGAACAGAAAAAATTGGACCAAAGCTCCCAGCTGCAGGGAGCAAAGAAG
GGGCGGAGAGAGCTGCGATTATTTTCTAAGAGGACGGAGAGAGGTTTGTGCACGCGACAG
TTCACTGGGGAGGGCAGGGTCTGACCACAACGCGGTTCGGAGTTGGTTTGGTTTTGGTTT
TTTTGTGTTTTTTTTAATATAAAAAAAAGCGTAGGGAAAAAACCTAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-221, - strand, RNAz p=0.99982
               

               
               262-411, - strand, RNAz p=0.834166
               

               
               547-648, - strand, RNAz p=0.5359

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-221, - strand, RNAz p=0.99982
               

               
               262-411, - strand, RNAz p=0.834166
               

               
               547-648, - strand, RNAz p=0.5359

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               51-153, + strand, RNAmicro p=0.999996

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               51-153, + strand, RNAmicro p=0.999996

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               84-181, 162093 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BE478039.1|), 
blast E-value=1e-27, identity=92.86% 
               

               
               84-221, 958429 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK770278.1|), 
blast E-value=1e-30, identity=89.21% 
               

               
               84-221, 1266327 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN522893.1|), 
blast E-value=1e-30, identity=89.21% 
               

               
               84-221, 1270263 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN525632.1|), 
blast E-value=1e-30, identity=89.21% 
               

               
               84-197, LB02816.CR_G09 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910064.1|), 
blast E-value=4e-30, identity=91.23% 
               

               
               84-197, LB02749.CR_M16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE348284.1|), 
blast E-value=1e-27, identity=90.35%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               84-181, 162093 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BE478039.1|), 
blast E-value=1e-27, identity=92.86% 
               

               
               84-221, 958429 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK770278.1|), 
blast E-value=1e-30, identity=89.21% 
               

               
               84-221, 1266327 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN522893.1|), 
blast E-value=1e-30, identity=89.21% 
               

               
               84-221, 1270263 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN525632.1|), 
blast E-value=1e-30, identity=89.21% 
               

               
               84-197, LB02816.CR_G09 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910064.1|), 
blast E-value=4e-30, identity=91.23% 
               

               
               84-197, LB02749.CR_M16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE348284.1|), 
blast E-value=1e-27, identity=90.35%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-648, gnl|bosTau2|chr25 (24546120-24546744)
               

               
               1-648, gnl|Hg17|chr16 (29733939-29734597)
               

               
               1-648, gnl|Mm7|chr7 (123114834-123114189)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr25 (24546120-24546744)
               

               
               1-648, gnl|Hg17|chr16 (29733939-29734597)
               

               
               1-648, gnl|Mm7|chr7 (123114834-123114189)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.45861)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	40-221, - strand, RNAz p=0.99982
	262-411, - strand, RNAz p=0.834166
	547-648, - strand, RNAz p=0.5359

	84-181, 162093 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE478039.1\|), blast E-value=1e-27, identity=92.86%
	84-221, 958429 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK770278.1\|), blast E-value=1e-30, identity=89.21%
	84-221, 1266327 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN522893.1\|), blast E-value=1e-30, identity=89.21%
	84-221, 1270263 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN525632.1\|), blast E-value=1e-30, identity=89.21%
	84-197, LB02816.CR_G09 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV910064.1\|), blast E-value=4e-30, identity=91.23%
	84-197, LB02749.CR_M16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|EE348284.1\|), blast E-value=1e-27, identity=90.35%

	1-648, gnl\|bosTau2\|chr25 (24546120-24546744)
	1-648, gnl\|Hg17\|chr16 (29733939-29734597)
	1-648, gnl\|Mm7\|chr7 (123114834-123114189)