Non-Coding RNA Search

Ss1.1-Mixn-0017i04.5

Sequence:


               
               CTGAAGTTGGCTAAGCTGCGGGATGAATTCGACATTGTTGGAGATGTCCGAGGCAAAGGC
CTCATGATAGGAATAGAGATGGTGAAGGATAAGACAAGCCGCCAGCCTCTTCCCCTTGAG
GAAGTAAATCAAATCCTGATGGACTGCAAATGCATGGGGCTGCTGATTGGCAGAGGTGGC
ATTTTTTCTCAGACGTTCCGCATTGCACCCTCGATGTGCATCACTAAACCAGAAGTCGAT
TTTGCGGTGGAAGTATTCCGTTCGGCCTTAATCCAACACATGGAGAGAAGAGCTAAATAA
ATACCTTTTAAATAAAAAAATCACAAGCCTCAAGAACTTCCCACTTAGGCTCAAGGGTGA
ATTTGAGAAATTCCAGAACCACTGGTGTTAGTTGTAAGTAGTTGACTGCCTCGCAGTCGT
ATTTGTTAACGGAGCCTCTGTTATCCTGAGAAAGCCGTCCTTTAGGAATGGGTGTCTCTC
CCTAGCTCAGAGAGTAGATCCTAATTAGTCTAGGTTACTTATGGTCGTTTGATTGCCCTT
TGTGGTGACAGTCTTAGGCCTGATATGTGACACGATTCCTGAAGGAGAATCTCTTGATGG
AGGTGCCTTCAGGGAAAGTTTCTTCATCTTTTGCTTTTCATCTCTGGAAGAGATGTCCTT
TTTCTTGCACTGAAGAGTCCTATATCAGGATGGGACTGTTCCAGCCATGCCAGCCACATT
GTGGCCAGGGCTTATTTGCTGAGGTTGGAGGATAGAAGGAAGCTGAGTCCTTAGTGATGT
CAGTGGGCCACTGATTTAACCAATCCTGGAGCCACCTTACCTTGGGGCTTCTTGTTATAT
GGGATAATAAACTCAATACATTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAAGTTGGCTAAGCTGCGGGATGAATTCGACATTGTTGGAGATGTCCGAGGCAAAGGC
CTCATGATAGGAATAGAGATGGTGAAGGATAAGACAAGCCGCCAGCCTCTTCCCCTTGAG
GAAGTAAATCAAATCCTGATGGACTGCAAATGCATGGGGCTGCTGATTGGCAGAGGTGGC
ATTTTTTCTCAGACGTTCCGCATTGCACCCTCGATGTGCATCACTAAACCAGAAGTCGAT
TTTGCGGTGGAAGTATTCCGTTCGGCCTTAATCCAACACATGGAGAGAAGAGCTAAATAA
ATACCTTTTAAATAAAAAAATCACAAGCCTCAAGAACTTCCCACTTAGGCTCAAGGGTGA
ATTTGAGAAATTCCAGAACCACTGGTGTTAGTTGTAAGTAGTTGACTGCCTCGCAGTCGT
ATTTGTTAACGGAGCCTCTGTTATCCTGAGAAAGCCGTCCTTTAGGAATGGGTGTCTCTC
CCTAGCTCAGAGAGTAGATCCTAATTAGTCTAGGTTACTTATGGTCGTTTGATTGCCCTT
TGTGGTGACAGTCTTAGGCCTGATATGTGACACGATTCCTGAAGGAGAATCTCTTGATGG
AGGTGCCTTCAGGGAAAGTTTCTTCATCTTTTGCTTTTCATCTCTGGAAGAGATGTCCTT
TTTCTTGCACTGAAGAGTCCTATATCAGGATGGGACTGTTCCAGCCATGCCAGCCACATT
GTGGCCAGGGCTTATTTGCTGAGGTTGGAGGATAGAAGGAAGCTGAGTCCTTAGTGATGT
CAGTGGGCCACTGATTTAACCAATCCTGGAGCCACCTTACCTTGGGGCTTCTTGTTATAT
GGGATAATAAACTCAATACATTGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               188-858, gnl|bosTau2|chr19 (28004055-28004739)
               

               
               188-858, gnl|Hg17|chr5 (35034693-35033971)
               

               
               188-858, gnl|Mm7|chr15 (10471095-10471796)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               188-858, gnl|bosTau2|chr19 (28004055-28004739)
               

               
               188-858, gnl|Hg17|chr5 (35034693-35033971)
               

               
               188-858, gnl|Mm7|chr15 (10471095-10471796)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               lun (0.451467)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               eli (0.151814)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.451467)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               eli (0.151814)

	188-858, gnl\|bosTau2\|chr19 (28004055-28004739)
	188-858, gnl\|Hg17\|chr5 (35034693-35033971)
	188-858, gnl\|Mm7\|chr15 (10471095-10471796)