Non-Coding RNA Search

Ss1.1-Mixn-0017o16.5

Sequence:


               
               CCCAAGGGCCTGCCGCTGTCCCTGGCAGCCAGGCCTGCATGCAGGAGCATCTGTGGGCAG
CTTTCGTGTCTGAGCCGTGGCTGCAGGGCAGCGCCCTTCCCAGAGCCCAGGCAGGGCGGA
GGGCTGAGACCCGCTGTGATGGCCTTTCTCCCCTACAGAGAAGCTGAAGGATGCGGGCCT
GCAGGCGCCCAAGGCCGTGCAGCACCCCCTGCACCCGGCGCCCACTCCCCACCACCCGGT
GCCCAGCCTCCTCTCCAACCATGGCCTCTTCTCGCTCCCGGGCAGCAGCGCCGCCACGGC
CCTGCTCATCCAGCGCACCAACGAGGAGGAGAAGTGGCTGGCGCGGCAGCGGCGGCTGCG
GCAGGAGAAGGAGGACCGGCAGTCGCAGATGTCCGAGTTCCGGCAGCAGGTGCTGGAGCA
GCACCTGGACATGGGCCGGCCCCCGGCGCCTGCAGAGACGGAGCACAGGCCTGAGAGCGC
CAGGTGGGGCCGGGCACCGCCGCTGAGGTTTCATTTCGCCGCCCCTGCCCCTGCCACCCC
CGCCAGTCTCGCCCAGGAGGGAGCAGAGGGAGCGGGGAGAGCAGCTGCTCGCGGGCGCCT
GGGTCCGGAGCCCGGGCCCCTCCCACGCAGGACCCTGGGGCCCTGCAGAGGCAGGGACTT
TTCAGTTAATAATCACATCTCTCCCACTCCCTCTGCCCAAATTTTTCTAAATGAGATGGC
AACTGCCTTTAATTTTTAAACAAAAAAATTCATTGTATTGCTTTAGTAATTAAAAAAACA
AAAAAACACAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAAGGGCCTGCCGCTGTCCCTGGCAGCCAGGCCTGCATGCAGGAGCATCTGTGGGCAG
CTTTCGTGTCTGAGCCGTGGCTGCAGGGCAGCGCCCTTCCCAGAGCCCAGGCAGGGCGGA
GGGCTGAGACCCGCTGTGATGGCCTTTCTCCCCTACAGAGAAGCTGAAGGATGCGGGCCT
GCAGGCGCCCAAGGCCGTGCAGCACCCCCTGCACCCGGCGCCCACTCCCCACCACCCGGT
GCCCAGCCTCCTCTCCAACCATGGCCTCTTCTCGCTCCCGGGCAGCAGCGCCGCCACGGC
CCTGCTCATCCAGCGCACCAACGAGGAGGAGAAGTGGCTGGCGCGGCAGCGGCGGCTGCG
GCAGGAGAAGGAGGACCGGCAGTCGCAGATGTCCGAGTTCCGGCAGCAGGTGCTGGAGCA
GCACCTGGACATGGGCCGGCCCCCGGCGCCTGCAGAGACGGAGCACAGGCCTGAGAGCGC
CAGGTGGGGCCGGGCACCGCCGCTGAGGTTTCATTTCGCCGCCCCTGCCCCTGCCACCCC
CGCCAGTCTCGCCCAGGAGGGAGCAGAGGGAGCGGGGAGAGCAGCTGCTCGCGGGCGCCT
GGGTCCGGAGCCCGGGCCCCTCCCACGCAGGACCCTGGGGCCCTGCAGAGGCAGGGACTT
TTCAGTTAATAATCACATCTCTCCCACTCCCTCTGCCCAAATTTTTCTAAATGAGATGGC
AACTGCCTTTAATTTTTAAACAAAAAAATTCATTGTATTGCTTTAGTAATTAAAAAAACA
AAAAAACACAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50800452|ref|XP_424125.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50800452|ref|XP_424125.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               226-385, - strand, RNAz p=0.943268

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               226-385, - strand, RNAz p=0.943268

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               109-494, gnl|bosTau2|chr18 (7920906-7921291)
               

               
               109-494, gnl|Hg17|chr16 (84248340-84248713)
               

               
               109-494, gnl|Mm7|chr8 (119203976-119204361)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-494, gnl|bosTau2|chr18 (7920906-7921291)
               

               
               109-494, gnl|Hg17|chr16 (84248340-84248713)
               

               
               109-494, gnl|Mm7|chr8 (119203976-119204361)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	109-494, gnl\|bosTau2\|chr18 (7920906-7921291)
	109-494, gnl\|Hg17\|chr16 (84248340-84248713)
	109-494, gnl\|Mm7\|chr8 (119203976-119204361)