Non-Coding RNA Search

Ss1.1-Mixn-0018b24.5

Sequence:


               
               CCTTGATGTGTACCATCTCCTCTCATCCTCCCTACTACCCAGAGATCATTACCGAAGGTG
GAATTGAGATCTTAGAGGTTAAATCATTTTTATGGAACTCAGACAGCTAGTAAGTGACCA
AGTCAAGAGAGGTGCCAGGTCTGCCTGGATCAGGAGCTCTACACCTGGCCGAACATGTCC
CTTGAAAAGGCCCTTCTGCCCTCACTGTGATTAAGTTAAGGGACTTCCTGCCTCTTCACC
AGCCTTAGAAGCCAAAGCCTCGTTCTTTCCAGGACCCCTGCCCACACTCGGAACTAAGAT
TGGCCTGAGGCTGCACTAGAATCCAGTTAGGGTCCAGAATCCTGTTTGCTGATAAACAAG
GAGAATTCATGGCTCCTGTACCCCTTTTCTCTCTTCACTCCCTACATCTGGGGAAGGGGC
ATTTAGTGGTCCACTGGGAGATGGACCAATGTGACCTGGTATTTTGGAAATGGGATGGCT
AGGGCGGGGGGAGGAGCGAGGTAAGAAGGACTGGGTTTGAGACCTGTGCTGGGGACCATC
ACTCAGGGTCCCTTCTGGAACCATTAAACCCCAGGATGGAACAGCTAGCACCTCATCCAT
GCAGAATTTTGGAGGCCTGGGGAAAATTCTGGAAAATGCCACTGTCCAGTGGGAATTAAA
GAGATGTGTCCCAGAACTGGACCTGTGCTTAGGTGGGAGACTAAACAGTCAGACTGACTA
CCTACCCACCCCCTCAAGCTGACCCTTCTGAATGGATGGGGGGGCCGCACCCCAGTGCCC
TCAAATCCCACCATTAGTGCTCATTTCTCTTTGTGAAGGTGGTGTGAAGGGTACTGGGTC
CTAGAGCAATTGCTGCCTCTCCACTAAGCCAAGGCCACAGTCGCAGGAGAGAATGTCCCC
CTGGGCAAGGTACCCCGGCCAACCTCAGCCACCCCTCACTCCTGGGGCACTTCCCCAGAA
ATCCCAGCCAGGGCACTCAGACTGGCCGGGGGCAAGGCAGAGAAGCTGGAATCATCCTGG
TCCTTGTCATTCCCACTCTTTGCTTGCCCCTGCCTCCAACCCCGCTAGAATGTCTCCCAG
GCCTCTGTCTGTCGTGGGAGTAAAGCTGAGGTAAGAATTTCCCATGGAGGGGAGTGGGAT
AGCAGTGGTTTTGAAGGTAGCGATCTTCTGAGCCAGGGAGCCAGTTCTCAGGCCCAAATC
AACCTCCCTGGAGGAAAAATCCTTTCTACTTTCACAATTTTATTGCAATGCAGGGAACAC
AAAACAAAGAGGATTTATTGAGGACACGACACCACATTGGAGAAAAAATTTTTTTTCCAC
TACCCGAGTCGTGGTCCCGAAACATAAGATCTAGTAGACAAAAAGAGGGATGGGAAGGCA
AGCACAGACCCTGTAATTCCTTCACTGAGACCACCCCTTCCCTAGGCAGCTCTCAGCAGC
TTCCAGAATCTACACAGCTCTCCCAAGAGTGGATAAAGGGGAGCAGAGCGTCGGAAATGG
GTGCTCCTTGATTTCTTGTGATGACCAAACCAATTATGATCACCAGATTGCTCTGTGATT
TGCCCTGATTGTCATGGATTCTGATATTCACATCAAGCAATTCTGGAAGTGGGCTGCATC
CCACCAGACTGATCAGCATCTTCCTGTGGGTGTGAATGCCATTGGGTTCTGTGCGTCCCC
TGAGCCCGTCACTGCCGCCCAATGGGGCAAGGAAGCAAAAAACATTTCTTACTCTTATGT
GTTTTAACAAAAGTTTATAAAACAAAATAAATGGCGCGTATGTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGATGTGTACCATCTCCTCTCATCCTCCCTACTACCCAGAGATCATTACCGAAGGTG
GAATTGAGATCTTAGAGGTTAAATCATTTTTATGGAACTCAGACAGCTAGTAAGTGACCA
AGTCAAGAGAGGTGCCAGGTCTGCCTGGATCAGGAGCTCTACACCTGGCCGAACATGTCC
CTTGAAAAGGCCCTTCTGCCCTCACTGTGATTAAGTTAAGGGACTTCCTGCCTCTTCACC
AGCCTTAGAAGCCAAAGCCTCGTTCTTTCCAGGACCCCTGCCCACACTCGGAACTAAGAT
TGGCCTGAGGCTGCACTAGAATCCAGTTAGGGTCCAGAATCCTGTTTGCTGATAAACAAG
GAGAATTCATGGCTCCTGTACCCCTTTTCTCTCTTCACTCCCTACATCTGGGGAAGGGGC
ATTTAGTGGTCCACTGGGAGATGGACCAATGTGACCTGGTATTTTGGAAATGGGATGGCT
AGGGCGGGGGGAGGAGCGAGGTAAGAAGGACTGGGTTTGAGACCTGTGCTGGGGACCATC
ACTCAGGGTCCCTTCTGGAACCATTAAACCCCAGGATGGAACAGCTAGCACCTCATCCAT
GCAGAATTTTGGAGGCCTGGGGAAAATTCTGGAAAATGCCACTGTCCAGTGGGAATTAAA
GAGATGTGTCCCAGAACTGGACCTGTGCTTAGGTGGGAGACTAAACAGTCAGACTGACTA
CCTACCCACCCCCTCAAGCTGACCCTTCTGAATGGATGGGGGGGCCGCACCCCAGTGCCC
TCAAATCCCACCATTAGTGCTCATTTCTCTTTGTGAAGGTGGTGTGAAGGGTACTGGGTC
CTAGAGCAATTGCTGCCTCTCCACTAAGCCAAGGCCACAGTCGCAGGAGAGAATGTCCCC
CTGGGCAAGGTACCCCGGCCAACCTCAGCCACCCCTCACTCCTGGGGCACTTCCCCAGAA
ATCCCAGCCAGGGCACTCAGACTGGCCGGGGGCAAGGCAGAGAAGCTGGAATCATCCTGG
TCCTTGTCATTCCCACTCTTTGCTTGCCCCTGCCTCCAACCCCGCTAGAATGTCTCCCAG
GCCTCTGTCTGTCGTGGGAGTAAAGCTGAGGTAAGAATTTCCCATGGAGGGGAGTGGGAT
AGCAGTGGTTTTGAAGGTAGCGATCTTCTGAGCCAGGGAGCCAGTTCTCAGGCCCAAATC
AACCTCCCTGGAGGAAAAATCCTTTCTACTTTCACAATTTTATTGCAATGCAGGGAACAC
AAAACAAAGAGGATTTATTGAGGACACGACACCACATTGGAGAAAAAATTTTTTTTCCAC
TACCCGAGTCGTGGTCCCGAAACATAAGATCTAGTAGACAAAAAGAGGGATGGGAAGGCA
AGCACAGACCCTGTAATTCCTTCACTGAGACCACCCCTTCCCTAGGCAGCTCTCAGCAGC
TTCCAGAATCTACACAGCTCTCCCAAGAGTGGATAAAGGGGAGCAGAGCGTCGGAAATGG
GTGCTCCTTGATTTCTTGTGATGACCAAACCAATTATGATCACCAGATTGCTCTGTGATT
TGCCCTGATTGTCATGGATTCTGATATTCACATCAAGCAATTCTGGAAGTGGGCTGCATC
CCACCAGACTGATCAGCATCTTCCTGTGGGTGTGAATGCCATTGGGTTCTGTGCGTCCCC
TGAGCCCGTCACTGCCGCCCAATGGGGCAAGGAAGCAAAAAACATTTCTTACTCTTATGT
GTTTTAACAAAAGTTTATAAAACAAAATAAATGGCGCGTATGTTTTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               900-1098, - strand, RNAz p=0.954114

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               900-1098, - strand, RNAz p=0.954114

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               2-838, gnl|bosTau2|chr13 (53637956-53637142)
               

               
               2-838, gnl|Hg17|chr20 (42492986-42493916)
               

               
               2-838, gnl|Mm7|chr2 (163312149-163312854)
               


               
               322-830, gnl|bosTau2|chr11 (16427877-16427379)
               

               
               322-830, gnl|Hg17|chr20 (42493394-42493906)
               


               
               860-1788, gnl|bosTau2|chr13 (53637082-53636151)
               

               
               860-1788, gnl|Hg17|chr20 (42493957-42494897)
               

               
               860-1788, gnl|Mm7|chr2 (163312920-163313795)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-838, gnl|bosTau2|chr13 (53637956-53637142)
               

               
               2-838, gnl|Hg17|chr20 (42492986-42493916)
               

               
               2-838, gnl|Mm7|chr2 (163312149-163312854)
               


               
               322-830, gnl|bosTau2|chr11 (16427877-16427379)
               

               
               322-830, gnl|Hg17|chr20 (42493394-42493906)
               


               
               860-1788, gnl|bosTau2|chr13 (53637082-53636151)
               

               
               860-1788, gnl|Hg17|chr20 (42493957-42494897)
               

               
               860-1788, gnl|Mm7|chr2 (163312920-163313795)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cli (0.611247)
               

               
               jej (0.494609)
               

               
               nco (0.485201)
               

               
               col (0.390016)
               

               
               sin (0.349895)
               

               
               fli (0.202881)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.611247)
               

               
               jej (0.494609)
               

               
               nco (0.485201)
               

               
               col (0.390016)
               

               
               sin (0.349895)
               

               
               fli (0.202881)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

	2-838, gnl\|bosTau2\|chr13 (53637956-53637142)
	2-838, gnl\|Hg17\|chr20 (42492986-42493916)
	2-838, gnl\|Mm7\|chr2 (163312149-163312854)

	322-830, gnl\|bosTau2\|chr11 (16427877-16427379)
	322-830, gnl\|Hg17\|chr20 (42493394-42493906)

	860-1788, gnl\|bosTau2\|chr13 (53637082-53636151)
	860-1788, gnl\|Hg17\|chr20 (42493957-42494897)
	860-1788, gnl\|Mm7\|chr2 (163312920-163313795)

	cli (0.611247)
	jej (0.494609)
	nco (0.485201)
	col (0.390016)
	sin (0.349895)
	fli (0.202881)
	duo (0.172801)
	nje (0.16592)
	cje (0.165235)
	kid (0.129735)
	eje (0.0988338)