Ss1.1-Mixn-0018c10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCTTCGCGCCAGACATGCCGTTCGTAGAGCTGGACACGAACTTGCCCGCCGACCGCTT GGCCGCAGGACTGGAGAAGCGGCTCTGCGCGGCCACCGCCTCCATCCTGGGCAAGCCTGA GGACGTGAGCATGGGCTAGGAAGCAGGGGGCGGGAGGCGGTTGGCGACCGAGGTAGAGCT CTGTCCGCGTCCGGCCTCTCCACTGCGACCCCGACTCTTTCGCGCTCGTCCGCCGCCCGC CAAGCTCTGACCTCTGGCTCTCCATGACCCACGGCCTCATCCCCACCTATACTCTGTGTC CCTTCGCGCCAGACATGCCGTTCGTAGAGCTGGACACGAACTTGCCCGCCGACCGCTTGG CCGCAGGACTGGAGAAGCGGCTCTGCGCGGCCACCGCCTCCATCCTGGGCAAGCCTGAGG ACCGCGTGAACGTGACGGTGCGGCCCGGCCTGGTCATGGCGCTGAACGGCTCAGCAGAGC CTGCCGCGCAGCTGCTCGTCTCCTCCATCGGTGTGGTGGGCACAGCTGAGGAGAACCGCG TCCACAGCGCCCGCTTCTTCGAGTTCCTTACTAAGGAGCTAGACCTGGCCCAGGACCGGA TAATTATCCGCTTTCTCCCTTTGGAGCCCTGGCAGATCGGCAAGAAAGGGACAATCATGA CTTTTTTGTGATTGGCATGGAGGGCATCCAGGACATCTGTAAGCTGGCAGCCCCTTCCAG AGAGGTCTCCCGGCAGGGTGAGGGTCTGATGGATGCCAACTTCTGTCACCCCCACGTCCA GACATGCCTGTGACCTCACCTGACAAATAAACAAAAAAAGCTTTTGTCTCTCAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCTTCGCGCCAGACATGCCGTTCGTAGAGCTGGACACGAACTTGCCCGCCGACCGCTT GGCCGCAGGACTGGAGAAGCGGCTCTGCGCGGCCACCGCCTCCATCCTGGGCAAGCCTGA GGACGTGAGCATGGGCTAGGAAGCAGGGGGCGGGAGGCGGTTGGCGACCGAGGTAGAGCT CTGTCCGCGTCCGGCCTCTCCACTGCGACCCCGACTCTTTCGCGCTCGTCCGCCGCCCGC CAAGCTCTGACCTCTGGCTCTCCATGACCCACGGCCTCATCCCCACCTATACTCTGTGTC CCTTCGCGCCAGACATGCCGTTCGTAGAGCTGGACACGAACTTGCCCGCCGACCGCTTGG CCGCAGGACTGGAGAAGCGGCTCTGCGCGGCCACCGCCTCCATCCTGGGCAAGCCTGAGG ACCGCGTGAACGTGACGGTGCGGCCCGGCCTGGTCATGGCGCTGAACGGCTCAGCAGAGC CTGCCGCGCAGCTGCTCGTCTCCTCCATCGGTGTGGTGGGCACAGCTGAGGAGAACCGCG TCCACAGCGCCCGCTTCTTCGAGTTCCTTACTAAGGAGCTAGACCTGGCCCAGGACCGGA TAATTATCCGCTTTCTCCCTTTGGAGCCCTGGCAGATCGGCAAGAAAGGGACAATCATGA CTTTTTTGTGATTGGCATGGAGGGCATCCAGGACATCTGTAAGCTGGCAGCCCCTTCCAG AGAGGTCTCCCGGCAGGGTGAGGGTCTGATGGATGCCAACTTCTGTCACCCCCACGTCCA GACATGCCTGTGACCTCACCTGACAAATAAACAAAAAAAGCTTTTGTCTCTCAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 3-317, gnl|bosTau2|chr17 (41559391-41559708) | |
| 3-317, gnl|Hg17|chr22 (22633647-22633977) | |
| 3-317, gnl|Mm7|chr10 (75428985-75428714) | |
| 423-599, gnl|bosTau2|chr17 (41559871-41560047) | |
| 423-599, gnl|canFam2|chr26 (31587045-31586842) | |
| 423-599, gnl|canFam2|chr26 (31586851-31587029) | |
| 423-599, gnl|dasNov1|scaffold_173835 (673-498) | |
| 423-599, gnl|dasNov1|scaffold_46794 (3642-3829) | |
| 423-599, gnl|echTel1|scaffold_234745 (1103-1302) | |
| 423-599, gnl|echTel1|scaffold_234745 (1293-1114) | |
| 423-599, gnl|fr1|chrUn (96258698-96258508) | |
| 423-599, gnl|galGal2|chr15 (8059978-8060169) | |
| 423-599, gnl|galGal2|chr15 (8060160-8059980) | |
| 423-599, gnl|hg17|chr22 (22634110-22634313) | |
| 423-599, gnl|Hg17|chr22 (22634128-22634304) | |
| 423-599, gnl|hg17|chr3 (38532011-38532191) | |
| 423-599, gnl|loxAfr1|scaffold_52527 (11396-11228) | |
| 423-599, gnl|loxAfr1|scaffold_67853 (5607-5810) | |
| 423-599, gnl|mm7|chr10 (75428584-75428381) | |
| 423-599, gnl|mm7|chr10 (75428390-75428569) | |
| 423-599, gnl|Mm7|chr10 (75428564-75428388) | |
| 423-599, gnl|monDom2|scaffold_510 (25049-24846) | |
| 423-599, gnl|monDom2|scaffold_510 (24852-25031) | |
| 423-599, gnl|oryCun1|scaffold_191559 (114881-114676) | |
| 423-599, gnl|oryCun1|scaffold_191559 (114687-114864) | |
| 423-599, gnl|panTro1|chr2 (39635046-39635225) | |
| 423-599, gnl|panTro1|chr23 (22675354-22675558) | |
| 423-599, gnl|rheMac2|chr11 (81599925-81599746) | |
| 423-599, gnl|rheMac2|chr2 (98019885-98019706) | |
| 423-599, gnl|rn3|chr20 (13594019-13593816) | |
| 423-599, gnl|rn3|chr20 (13593827-13594004) | |
| 423-599, gnl|tetNig1|chrUn_random (97102398-97102201) | |
| 423-599, gnl|tetNig1|chrUn_random (97102206-97102382) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-317, gnl|bosTau2|chr17 (41559391-41559708) | |
| 3-317, gnl|Hg17|chr22 (22633647-22633977) | |
| 3-317, gnl|Mm7|chr10 (75428985-75428714) | |
| 423-599, gnl|bosTau2|chr17 (41559871-41560047) | |
| 423-599, gnl|canFam2|chr26 (31587045-31586842) | |
| 423-599, gnl|canFam2|chr26 (31586851-31587029) | |
| 423-599, gnl|dasNov1|scaffold_173835 (673-498) | |
| 423-599, gnl|dasNov1|scaffold_46794 (3642-3829) | |
| 423-599, gnl|echTel1|scaffold_234745 (1103-1302) | |
| 423-599, gnl|echTel1|scaffold_234745 (1293-1114) | |
| 423-599, gnl|fr1|chrUn (96258698-96258508) | |
| 423-599, gnl|galGal2|chr15 (8059978-8060169) | |
| 423-599, gnl|galGal2|chr15 (8060160-8059980) | |
| 423-599, gnl|hg17|chr22 (22634110-22634313) | |
| 423-599, gnl|Hg17|chr22 (22634128-22634304) | |
| 423-599, gnl|hg17|chr3 (38532011-38532191) | |
| 423-599, gnl|loxAfr1|scaffold_52527 (11396-11228) | |
| 423-599, gnl|loxAfr1|scaffold_67853 (5607-5810) | |
| 423-599, gnl|mm7|chr10 (75428584-75428381) | |
| 423-599, gnl|mm7|chr10 (75428390-75428569) | |
| 423-599, gnl|Mm7|chr10 (75428564-75428388) | |
| 423-599, gnl|monDom2|scaffold_510 (25049-24846) | |
| 423-599, gnl|monDom2|scaffold_510 (24852-25031) | |
| 423-599, gnl|oryCun1|scaffold_191559 (114881-114676) | |
| 423-599, gnl|oryCun1|scaffold_191559 (114687-114864) | |
| 423-599, gnl|panTro1|chr2 (39635046-39635225) | |
| 423-599, gnl|panTro1|chr23 (22675354-22675558) | |
| 423-599, gnl|rheMac2|chr11 (81599925-81599746) | |
| 423-599, gnl|rheMac2|chr2 (98019885-98019706) | |
| 423-599, gnl|rn3|chr20 (13594019-13593816) | |
| 423-599, gnl|rn3|chr20 (13593827-13594004) | |
| 423-599, gnl|tetNig1|chrUn_random (97102398-97102201) | |
| 423-599, gnl|tetNig1|chrUn_random (97102206-97102382) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| cli (1.68093) | |
| cag (0.604778) | |
| duo (0.518403) | |
| nms (0.427716) | |
| fli (0.405762) | |
| nlu (0.383362) | |
| med (0.348756) | |
| mcp (0.341297) | |
| cje (0.330469) | |
| eli (0.303628) | |
| jej (0.296765) | |
| eje (0.296501) | |
| ute (0.265569) | |
| ese (0.253004) | |
| mas (0.210305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (1.68093) | |
| cag (0.604778) | |
| duo (0.518403) | |
| nms (0.427716) | |
| fli (0.405762) | |
| nlu (0.383362) | |
| med (0.348756) | |
| mcp (0.341297) | |
| cje (0.330469) | |
| eli (0.303628) | |
| jej (0.296765) | |
| eje (0.296501) | |
| ute (0.265569) | |
| ese (0.253004) | |
| mas (0.210305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) |