Non-Coding RNA Search

Ss1.1-Mixn-0018d06.5

Sequence:


               
               GGGCTAGCCCAGGGCTGCATGCTGAGCGCCCTCCTCCACAGCTTGCTGCTGACCCTCTCT
CCTGTCACCCCGTCCCTGCTCTCTCCCCAGATGTGTTCTGAGCTGGATGTCCAGGACCCA
GAGTTGCTGCACAGTTCCAAAAGGACAGCGCCCAACCCTGTGCACTGGGAGGGGACCCTC
CATTCCTCTCCCTCGCCTGTGCTGAGCATAGAGCCGGGCCTGGGTGGTGGGTGGGGGCTG
GGTGGGCGGTAGTCTTAGCCTGGAAACGCTTCTCTGGGTGTTTGGTGCTCTCTTGGGGAC
TACAAGTCCCAGAATGCAATGCACCCTGCCTCCTTGCTGTTAGATCATGCTTGGGGGAAG
TGGCATGTGGTTACAGGGCTGTGCATCTTGGGACATGTAGTTCTGGCCCTGGTCGGCCTG
ACACTTGCTGTAAGATGGGGGAGATCTTGTCATTTGATTTGTCCCTGGCAGGGGTAGCAA
GAATGTGGATGAAGGGGTAATGGTTCGAGCTCTGTTTCCCCTGACAGCTCTTGCTAGCGC
TCGGGTTAGAGCGTAAAAATCAAGGCCCTGTGGCATCCAGGGGAGGCTCCTTCCCTGTGC
ACAGTCCTGGAGTTTGAGGATGAGCCGGAGCAGATCAACGCAGCAGGGCTATGGGCACGG
GCTGGCAGAGAGCTTGGAAGGAAGCCCTCTCGGGGGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGGCTGGAGTTGGTGTGTGACGGATGCTCCAGGCATGTTGCTGCTTGTATGGCT
TCTTTGACCTCTGACCCCGCTGCCCATTCTTTCTCTCCAACACCGCAGAAGCTGCCTCTC
CTCCTCCCTCCCTGGGGAGCCGGGTGGCCAGGGAGGGGAGTGGTGGAGCCAGGGTGTTGC
CAGCCCCTGTGCCCTTGAGTCTCAGAGATGTATCAAAGCCAGCTGGGCTGAGCTCAGACC
AAGAGGAAAACACTGGAAGTCAATAAAGCTGAATTTCGAGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTAGCCCAGGGCTGCATGCTGAGCGCCCTCCTCCACAGCTTGCTGCTGACCCTCTCT
CCTGTCACCCCGTCCCTGCTCTCTCCCCAGATGTGTTCTGAGCTGGATGTCCAGGACCCA
GAGTTGCTGCACAGTTCCAAAAGGACAGCGCCCAACCCTGTGCACTGGGAGGGGACCCTC
CATTCCTCTCCCTCGCCTGTGCTGAGCATAGAGCCGGGCCTGGGTGGTGGGTGGGGGCTG
GGTGGGCGGTAGTCTTAGCCTGGAAACGCTTCTCTGGGTGTTTGGTGCTCTCTTGGGGAC
TACAAGTCCCAGAATGCAATGCACCCTGCCTCCTTGCTGTTAGATCATGCTTGGGGGAAG
TGGCATGTGGTTACAGGGCTGTGCATCTTGGGACATGTAGTTCTGGCCCTGGTCGGCCTG
ACACTTGCTGTAAGATGGGGGAGATCTTGTCATTTGATTTGTCCCTGGCAGGGGTAGCAA
GAATGTGGATGAAGGGGTAATGGTTCGAGCTCTGTTTCCCCTGACAGCTCTTGCTAGCGC
TCGGGTTAGAGCGTAAAAATCAAGGCCCTGTGGCATCCAGGGGAGGCTCCTTCCCTGTGC
ACAGTCCTGGAGTTTGAGGATGAGCCGGAGCAGATCAACGCAGCAGGGCTATGGGCACGG
GCTGGCAGAGAGCTTGGAAGGAAGCCCTCTCGGGGGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGGCTGGAGTTGGTGTGTGACGGATGCTCCAGGCATGTTGCTGCTTGTATGGCT
TCTTTGACCTCTGACCCCGCTGCCCATTCTTTCTCTCCAACACCGCAGAAGCTGCCTCTC
CTCCTCCCTCCCTGGGGAGCCGGGTGGCCAGGGAGGGGAGTGGTGGAGCCAGGGTGTTGC
CAGCCCCTGTGCCCTTGAGTCTCAGAGATGTATCAAAGCCAGCTGGGCTGAGCTCAGACC
AAGAGGAAAACACTGGAAGTCAATAAAGCTGAATTTCGAGAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               423-582, + strand, RNAz p=0.938278
               

               
               830-947, - strand, RNAz p=0.521535

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               423-582, + strand, RNAz p=0.938278
               

               
               830-947, - strand, RNAz p=0.521535

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               292-444, - strand, RNAmicro p=1
               

               
               475-567, + strand, RNAmicro p=0.997864
               

               
               882-937, + strand, RNAmicro p=0.960955

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               292-444, - strand, RNAmicro p=1
               

               
               475-567, + strand, RNAmicro p=0.997864
               

               
               882-937, + strand, RNAmicro p=0.960955

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC047056, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC047056, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1001, gnl|bosTau2|chr2 (65225334-65226364)
               

               
               1-1001, gnl|Hg17|chr2 (219976124-219977122)
               

               
               1-1001, gnl|Mm7|chr1 (75467736-75468723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1001, gnl|bosTau2|chr2 (65225334-65226364)
               

               
               1-1001, gnl|Hg17|chr2 (219976124-219977122)
               

               
               1-1001, gnl|Mm7|chr1 (75467736-75468723)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	423-582, + strand, RNAz p=0.938278
	830-947, - strand, RNAz p=0.521535

	292-444, - strand, RNAmicro p=1
	475-567, + strand, RNAmicro p=0.997864
	882-937, + strand, RNAmicro p=0.960955

	1-1001, gnl\|bosTau2\|chr2 (65225334-65226364)
	1-1001, gnl\|Hg17\|chr2 (219976124-219977122)
	1-1001, gnl\|Mm7\|chr1 (75467736-75468723)

	ece (0.229305)
	fcc (0.197785)
	nep (0.183925)
	ill (0.175593)
	cje (0.165235)
	cag (0.151194)
	nca (0.136874)
	eep (0.122564)
	nbm (0.0993246)
	eje (0.0988338)