Non-Coding RNA Search

Ss1.1-Mixn-0018d16.5

Sequence:


               
               TTTTTTTTTTTTTTGGAAATGAACGTAAATTTATTGAAACTGGTTTTGGGGAGGATGGAT
GGGTGGGTAGCCAAGGGTTTTCCGAAGAACTGGGAAGGAGCCAGTGCCTGGCTGGGTGGG
AGGGGTGCCGACCACAGACCCTATCTCAGGCCCAATTTCTTCTTCTCCTTCTGCTTCTTG
CGTACCACGTCCAGGTTCCGATCCTTCCACATGCTCTTGCGCAGCTTAATGGGGCGTGAG
CCCACATACTTCCCATTCATCTCACGCATGGCGCGCACATAGTCACTGGGGTCCTTAAAG
CTGACGAAGCCATAGCCCTTGGTCTTGCCCGTGCGTTTGTCACGGATCACCTTAGCCTTA
AGGAAGGATGGGAAGCGGCTGAAGGCTCGTGCCAAGATGTCATCGTTCACCTCATTGCCC
AGATCCCCACAGAAGATCCGGAAGTCATCTGCATCCCACTCCAGAAGGCTGGGGTCTTCC
CAGCTGCTCCCAGCTGCCGTGCGAATGCAGCGCTTCAATTTCTCTGGCTTTCCTTTCTTT
TTGTCCTCACCCAGAGGCTCTGGGACCTCAAGAGCCATGAGGCCAGGCGGTGGCTCAGGC
CTCGGGGGCCGGGGTCTCGGACGCAGGGACAGGAGCTCAGGAATGCGCAGCGGGGGCAGT
AGGCCTCGCACAACTTCCAGCGGGAGGGGCAGGGGCTCGGGCTCAGGCAAAGGCATGGCC
AGGGCCAGTGGAAGGCTGGGCCCAATGACTGCAGGGCCAGCTGGGGCACCTCCTGCTCCC
ACGGCCACTGCTGCACTAGCCTCCTCCAGCCCAGCGGCCGCTGCCACCACAGCCTCCTCT
TTCTCTTTCAGGCCCAGCCCCAGGCCTAGGCCCAGCTCTCGGGGTGTTGCTGGCTCTTCC
AGAGGAGGCCTCAAAGCAGCCATGGAGCTCAGGGGGGGCCCTGGGGCCCGAGCCATCGGT
GGCAGCATCATAGGTGGTCCAGGGGGCCCAGGCAGAGGGGGGCCCACAAGGGCCTGGTGT
GGGGGCCGCAGGGCCATAGGGCGGGGTCCAGCTGCTGCTCGCCTCAGGAACATGGCTTCT
CGAGCCTCTGGACTGTCCAGGTGACTCCGGTCACCGGGGCCAAAGCCAACTGGGCCCACA
AAAGGTGGGCCACCCACCATGGGAGGAACCACTGTGGCTGCTGCAGCTGCTCGGGCCTCC
AGAGTCTGTTGGACCTGCTGGTACGTGTTGGTCGCAATGATAGGGCGAATCACAGGAGCT
GTTGGGACTTGCATTGCTTCTACTGTGGGGACCGTGGGCACCGCAGGCACAGCAGCTGGG
ATTCCGGTTACTGGAGCCCCCAAAACTTCTTGTTCAAACAGGGCCATCTCCGCCTCCATC
TCCTTCAAGCGTTCCTCGCCGCTCTTGCCCGGGATGCCGGTGCCGGGGCCCGGGACCACA
GGTCCTCCTGTACCCGGGAGTCCCGGAGTTGGCCCCGCCCCGGCCATCGCTGCTGCCGTG
GGTGTCGCCGCTACTACCGCCTCAGCTCAATTGCCTCTGCCGGTTCCGCTGTGTACTCTC
GGGCTTCGTCGGGATGGGCGCCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTGGAAATGAACGTAAATTTATTGAAACTGGTTTTGGGGAGGATGGAT
GGGTGGGTAGCCAAGGGTTTTCCGAAGAACTGGGAAGGAGCCAGTGCCTGGCTGGGTGGG
AGGGGTGCCGACCACAGACCCTATCTCAGGCCCAATTTCTTCTTCTCCTTCTGCTTCTTG
CGTACCACGTCCAGGTTCCGATCCTTCCACATGCTCTTGCGCAGCTTAATGGGGCGTGAG
CCCACATACTTCCCATTCATCTCACGCATGGCGCGCACATAGTCACTGGGGTCCTTAAAG
CTGACGAAGCCATAGCCCTTGGTCTTGCCCGTGCGTTTGTCACGGATCACCTTAGCCTTA
AGGAAGGATGGGAAGCGGCTGAAGGCTCGTGCCAAGATGTCATCGTTCACCTCATTGCCC
AGATCCCCACAGAAGATCCGGAAGTCATCTGCATCCCACTCCAGAAGGCTGGGGTCTTCC
CAGCTGCTCCCAGCTGCCGTGCGAATGCAGCGCTTCAATTTCTCTGGCTTTCCTTTCTTT
TTGTCCTCACCCAGAGGCTCTGGGACCTCAAGAGCCATGAGGCCAGGCGGTGGCTCAGGC
CTCGGGGGCCGGGGTCTCGGACGCAGGGACAGGAGCTCAGGAATGCGCAGCGGGGGCAGT
AGGCCTCGCACAACTTCCAGCGGGAGGGGCAGGGGCTCGGGCTCAGGCAAAGGCATGGCC
AGGGCCAGTGGAAGGCTGGGCCCAATGACTGCAGGGCCAGCTGGGGCACCTCCTGCTCCC
ACGGCCACTGCTGCACTAGCCTCCTCCAGCCCAGCGGCCGCTGCCACCACAGCCTCCTCT
TTCTCTTTCAGGCCCAGCCCCAGGCCTAGGCCCAGCTCTCGGGGTGTTGCTGGCTCTTCC
AGAGGAGGCCTCAAAGCAGCCATGGAGCTCAGGGGGGGCCCTGGGGCCCGAGCCATCGGT
GGCAGCATCATAGGTGGTCCAGGGGGCCCAGGCAGAGGGGGGCCCACAAGGGCCTGGTGT
GGGGGCCGCAGGGCCATAGGGCGGGGTCCAGCTGCTGCTCGCCTCAGGAACATGGCTTCT
CGAGCCTCTGGACTGTCCAGGTGACTCCGGTCACCGGGGCCAAAGCCAACTGGGCCCACA
AAAGGTGGGCCACCCACCATGGGAGGAACCACTGTGGCTGCTGCAGCTGCTCGGGCCTCC
AGAGTCTGTTGGACCTGCTGGTACGTGTTGGTCGCAATGATAGGGCGAATCACAGGAGCT
GTTGGGACTTGCATTGCTTCTACTGTGGGGACCGTGGGCACCGCAGGCACAGCAGCTGGG
ATTCCGGTTACTGGAGCCCCCAAAACTTCTTGTTCAAACAGGGCCATCTCCGCCTCCATC
TCCTTCAAGCGTTCCTCGCCGCTCTTGCCCGGGATGCCGGTGCCGGGGCCCGGGACCACA
GGTCCTCCTGTACCCGGGAGTCCCGGAGTTGGCCCCGCCCCGGCCATCGCTGCTGCCGTG
GGTGTCGCCGCTACTACCGCCTCAGCTCAATTGCCTCTGCCGGTTCCGCTGTGTACTCTC
GGGCTTCGTCGGGATGGGCGCCCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9BU66_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BU66_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               724-1476, - strand, RNAz p=0.990294

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               724-1476, - strand, RNAz p=0.990294

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               14-254, gnl|bosTau2|chr18 (42214663-42214907)
               

               
               14-254, gnl|Hg17|chr19 (40820427-40820183)
               

               
               14-254, gnl|Mm7|chr7 (27582224-27582444)
               


               
               565-905, gnl|bosTau2|chr18 (42217356-42217696)
               

               
               565-905, gnl|Hg17|chr19 (40816763-40816423)
               

               
               565-905, gnl|Mm7|chr7 (27586047-27586387)
               


               
               1130-1231, gnl|bosTau2|chr18 (42220169-42220271)
               

               
               1130-1231, gnl|Hg17|chr19 (40813966-40813863)
               

               
               1130-1231, gnl|Mm7|chr7 (27588954-27589055)
               


               
               1358-1584, gnl|bosTau2|chr18 (42221930-42222156)
               

               
               1358-1584, gnl|Hg17|chr19 (40812025-40811799)
               

               
               1358-1584, gnl|Mm7|chr7 (27591159-27591374)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-254, gnl|bosTau2|chr18 (42214663-42214907)
               

               
               14-254, gnl|Hg17|chr19 (40820427-40820183)
               

               
               14-254, gnl|Mm7|chr7 (27582224-27582444)
               


               
               565-905, gnl|bosTau2|chr18 (42217356-42217696)
               

               
               565-905, gnl|Hg17|chr19 (40816763-40816423)
               

               
               565-905, gnl|Mm7|chr7 (27586047-27586387)
               


               
               1130-1231, gnl|bosTau2|chr18 (42220169-42220271)
               

               
               1130-1231, gnl|Hg17|chr19 (40813966-40813863)
               

               
               1130-1231, gnl|Mm7|chr7 (27588954-27589055)
               


               
               1358-1584, gnl|bosTau2|chr18 (42221930-42222156)
               

               
               1358-1584, gnl|Hg17|chr19 (40812025-40811799)
               

               
               1358-1584, gnl|Mm7|chr7 (27591159-27591374)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               cki (0.826173)
               

               
               cut (0.509771)
               

               
               che (0.408942)
               

               
               cov (0.396458)
               

               
               pty (0.285429)
               

               
               ese (0.253004)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.826173)
               

               
               cut (0.509771)
               

               
               che (0.408942)
               

               
               cov (0.396458)
               

               
               pty (0.285429)
               

               
               ese (0.253004)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

	14-254, gnl\|bosTau2\|chr18 (42214663-42214907)
	14-254, gnl\|Hg17\|chr19 (40820427-40820183)
	14-254, gnl\|Mm7\|chr7 (27582224-27582444)

	565-905, gnl\|bosTau2\|chr18 (42217356-42217696)
	565-905, gnl\|Hg17\|chr19 (40816763-40816423)
	565-905, gnl\|Mm7\|chr7 (27586047-27586387)

	1130-1231, gnl\|bosTau2\|chr18 (42220169-42220271)
	1130-1231, gnl\|Hg17\|chr19 (40813966-40813863)
	1130-1231, gnl\|Mm7\|chr7 (27588954-27589055)

	1358-1584, gnl\|bosTau2\|chr18 (42221930-42222156)
	1358-1584, gnl\|Hg17\|chr19 (40812025-40811799)
	1358-1584, gnl\|Mm7\|chr7 (27591159-27591374)

	cki (0.826173)
	cut (0.509771)
	che (0.408942)
	cov (0.396458)
	pty (0.285429)
	ese (0.253004)
	nep (0.183925)
	sag (0.182715)
	fty (0.17584)
	mcp (0.170648)
	cli (0.152812)
	spl (0.143184)
	hyp (0.142837)
	csk (0.140746)
	nca (0.136874)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	nbm (0.0993246)