Ss1.1-Mixn-0018e04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGACGAAGGGACGTCGCGTCGCAGGGTCTAGAGCAGCTGCTGCGGAGCCGCCGGACGGA CCGCCTGCACCCGCCTGCCCCTCCTGCCCCTCCTGCCCCGTCTGCCTCGTCTGCCCCGCC ATGGCTGAGAGTGACTGGGACACGGTGACGGTGCTGCGCAAAAAGGGCCCCACAGCCGCC CAGGCCAAGTCCAAGCAGGCCATCTTAGCAGCTCAGAGGCGAGGAGAAGATGTGGAGACT TCCAAGAAATGGGCCGCCGGCCAGAACAAACAGCACTCAATCACCAAGAACACAGCCAAG CTGGACCGGGAGACGGAGGAGCTGCACCACGACCGGGTCACCCTCGAGGTGGGCAAGGTG ATCCAGCAGGGCCGCCAGAGCAAGGGGCTGACACAGAAGGACCTGGCGACGAAAATCAAC GAAAAGCCGCAGGTCATCGCGGACTATGAGAGTGGCCGGGCCATACCCAACAACCAGGTG CTGGGCAAAATTGAGAGAGCCATCGGCCTCAAGCTCCGGGGGAGGGACATCGGGAAGCCC ATTGAGAAGGGGCCCAGGGCAAAATGAACACAAAGCCTCGAAATCAGTGCGTTCCGGCTG AGCTCACCTGGCTGGTTGCCCTCGACCACCTGCGGCAGCGCGTTCTCATCACGCGGCCGA GCGGACCCGGCGGCAGCCCTGCCCAGACCCCTCCACCCACGCCTGCTGTCAGACTAACAA ACAGAACCTTGCAAAGTGTCCGCCACTCCTCGTCCCCCTCCACCCCCCCGTCCCCGTCCC CGTCCCCGTCCCGTCCCTCCAGGGGGCGCAGAGCGCTGCCTTCCTCTCCCCTGGCTCTGC CCAGTCGCCGCTGTGGCTCCCGAGGGGACCACCTCCCGCGGGTGGGTGGCCGGACCGTGG GGAGAGGAGCTGCGCCTGCGCCCGGCTCGCGGCGACGGCAATAAACGTGTGTTGCCCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGACGAAGGGACGTCGCGTCGCAGGGTCTAGAGCAGCTGCTGCGGAGCCGCCGGACGGA CCGCCTGCACCCGCCTGCCCCTCCTGCCCCTCCTGCCCCGTCTGCCTCGTCTGCCCCGCC ATGGCTGAGAGTGACTGGGACACGGTGACGGTGCTGCGCAAAAAGGGCCCCACAGCCGCC CAGGCCAAGTCCAAGCAGGCCATCTTAGCAGCTCAGAGGCGAGGAGAAGATGTGGAGACT TCCAAGAAATGGGCCGCCGGCCAGAACAAACAGCACTCAATCACCAAGAACACAGCCAAG CTGGACCGGGAGACGGAGGAGCTGCACCACGACCGGGTCACCCTCGAGGTGGGCAAGGTG ATCCAGCAGGGCCGCCAGAGCAAGGGGCTGACACAGAAGGACCTGGCGACGAAAATCAAC GAAAAGCCGCAGGTCATCGCGGACTATGAGAGTGGCCGGGCCATACCCAACAACCAGGTG CTGGGCAAAATTGAGAGAGCCATCGGCCTCAAGCTCCGGGGGAGGGACATCGGGAAGCCC ATTGAGAAGGGGCCCAGGGCAAAATGAACACAAAGCCTCGAAATCAGTGCGTTCCGGCTG AGCTCACCTGGCTGGTTGCCCTCGACCACCTGCGGCAGCGCGTTCTCATCACGCGGCCGA GCGGACCCGGCGGCAGCCCTGCCCAGACCCCTCCACCCACGCCTGCTGTCAGACTAACAA ACAGAACCTTGCAAAGTGTCCGCCACTCCTCGTCCCCCTCCACCCCCCCGTCCCCGTCCC CGTCCCCGTCCCGTCCCTCCAGGGGGCGCAGAGCGCTGCCTTCCTCTCCCCTGGCTCTGC CCAGTCGCCGCTGTGGCTCCCGAGGGGACCACCTCCCGCGGGTGGGTGGCCGGACCGTGG GGAGAGGAGCTGCGCCTGCGCCCGGCTCGCGGCGACGGCAATAAACGTGTGTTGCCCTCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 98-199, gnl|bosTau2|chr11 (86235818-86235717) | |
| 98-199, gnl|Hg17|chr9 (137036565-137036469) | |
| 98-199, gnl|Mm7|chr2 (25565244-25565341) | |
| 251-411, gnl|bosTau2|chr11 (86233712-86233552) | |
| 251-411, gnl|canFam2|chr9 (52058117-52057909) | |
| 251-411, gnl|danRer3|chr5 (71096004-71096216) | |
| 251-411, gnl|echTel1|scaffold_287872 (45198-45057) | |
| 251-411, gnl|fr1|chrUn (141067439-141067236) | |
| 251-411, gnl|galGal2|chr17 (10295571-10295762) | |
| 251-411, gnl|hg17|chr9 (137033530-137033744) | |
| 251-411, gnl|Hg17|chr9 (137033737-137033577) | |
| 251-411, gnl|loxAfr1|scaffold_53065 (14193-13982) | |
| 251-411, gnl|mm7|chr2 (25568042-25567846) | |
| 251-411, gnl|Mm7|chr2 (25567851-25568011) | |
| 251-411, gnl|monDom2|scaffold_1 (188542813-188542642) | |
| 251-411, gnl|oryCun1|scaffold_169199 (5148-5005) | |
| 251-411, gnl|panTro1|chr11 (121795489-121795703) | |
| 251-411, gnl|rheMac2|chr15 (1394683-1394468) | |
| 251-411, gnl|rn3|chr3 (3730661-3730465) | |
| 251-411, gnl|tetNig1|chr4 (4461293-4461503) | |
| 251-411, gnl|xenTro1|scaffold_302 (1205390-1205594) | |
| 505-739, gnl|bosTau2|chr11 (86232319-86232085) | |
| 505-739, gnl|Hg17|chr9 (137032635-137032407) | |
| 505-739, gnl|Mm7|chr2 (25569161-25569393) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-199, gnl|bosTau2|chr11 (86235818-86235717) | |
| 98-199, gnl|Hg17|chr9 (137036565-137036469) | |
| 98-199, gnl|Mm7|chr2 (25565244-25565341) | |
| 251-411, gnl|bosTau2|chr11 (86233712-86233552) | |
| 251-411, gnl|canFam2|chr9 (52058117-52057909) | |
| 251-411, gnl|danRer3|chr5 (71096004-71096216) | |
| 251-411, gnl|echTel1|scaffold_287872 (45198-45057) | |
| 251-411, gnl|fr1|chrUn (141067439-141067236) | |
| 251-411, gnl|galGal2|chr17 (10295571-10295762) | |
| 251-411, gnl|hg17|chr9 (137033530-137033744) | |
| 251-411, gnl|Hg17|chr9 (137033737-137033577) | |
| 251-411, gnl|loxAfr1|scaffold_53065 (14193-13982) | |
| 251-411, gnl|mm7|chr2 (25568042-25567846) | |
| 251-411, gnl|Mm7|chr2 (25567851-25568011) | |
| 251-411, gnl|monDom2|scaffold_1 (188542813-188542642) | |
| 251-411, gnl|oryCun1|scaffold_169199 (5148-5005) | |
| 251-411, gnl|panTro1|chr11 (121795489-121795703) | |
| 251-411, gnl|rheMac2|chr15 (1394683-1394468) | |
| 251-411, gnl|rn3|chr3 (3730661-3730465) | |
| 251-411, gnl|tetNig1|chr4 (4461293-4461503) | |
| 251-411, gnl|xenTro1|scaffold_302 (1205390-1205594) | |
| 505-739, gnl|bosTau2|chr11 (86232319-86232085) | |
| 505-739, gnl|Hg17|chr9 (137032635-137032407) | |
| 505-739, gnl|Mm7|chr2 (25569161-25569393) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| hyp (0.714184) | |
| nlu (0.575043) | |
| mcp (0.511945) | |
| amn (0.417711) | |
| cli (0.305623) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| med (0.232504) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| jej (0.197844) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| eli (0.151814) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.714184) | |
| nlu (0.575043) | |
| mcp (0.511945) | |
| amn (0.417711) | |
| cli (0.305623) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| med (0.232504) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| jej (0.197844) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| eli (0.151814) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) |