Ss1.1-Mixn-0018g21.5
|
GCAGGGCCGAGGACGCCGCAGATCTGGGACCCGGAGCAGCTCTGAGGCGGTGAATAATAG
CTCTTCAAGTCTGCAATAAAAAATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAA
GAAACAAAATGGAAAAAGTAAAAAAGTTGAAGAGGCAGAGCCTGAAGAATTTGTTGTAGA
AAAAGTACTGGACCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTAAAGTGGAAGGG
GTTTACAGATGCAGACAATACTTGGGAACCTGAAGAAAATTTGGATTGTCCAGAGTTAAT
TGAAGCATTTCTTAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGAGCAAAAAGAAAGTC
ATTATCTGACAGTGAATCTGATGATAGCAAATCAAAGAAGAAAAGAGATGCTGCTGATAA
ACCAAGAGGTTTTGCCAGAGGTCTTGATCCAGAACGAATAATTGGTGCCACAGACAGCAG
TGGAGAATTAATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCGGACTTGGTGCTGGC
AAAAGAGGCAAATATGAAGTGTCCTCAAATTGTAATTGCTTTTTATGAAGAGAGGCTAAC
TTGGCATTCTTGTCCAGAAGATGAAGCTCAATAATTGTTTGCATTGCTTTTTATATATAT
TTATACATATATATAAAATCTGGGTCTCAGTTTTTTTTGATTATTAGTGTGAAGAAATAA
TGACATTCTAATGAAAATCAAGTTTGATATGTTCGTTTTGAAGTAGTATTGGGCAAGTTG
TTGGGGATTTTTGTTTTTTGCATCTGTAGCACTGGTTACTTTGAACAAATAAAAGCTTTC
TGTAGTTGCTTCCTTTAGCAGAAAAGAACATTTGATACTATGGTATATTATTTCCTCGGC
ATTAGAGAACAGCTTTTCTAAATGTTGGGGAAAATCTATAGTCATTGCTCAATCAGAATT
TAGAATTTGCATTTAACTCATAAATGCTTAAGGACCATTCTGGGTTTTTCATGTGTGTAT
ACATAAAATACATAAATATGTGGCTTGGGGTTTTTTTGTTTTGGGGTATTTTTTAATACA
TTTACCAAAACAAAAATAGCATTTCACAACCATGCATAATCCCATGTTTCCGGGATTCCA
TAATTTTAAGCAATATAAGAAATCATTTCGACTTAAACTGAAATTTTTCAAGTCTTAACA
TTTCAAATTAATTTTGTAATTAATTGGACAACTTTAAACAATTTAAATTGGACACTTTAA
AGCAGCCATATCAGAATCTGTATCCATATCTACAGTCATATAAATGCAGTTTTATATCAG
AATCCCTAAAAGGAAAATTTTATCACTACCAACAGCCTCCCCACTCAAATGAAAAAACTA
GAAAAATCCTACTGTGTTTTAAATAAGCCAAGCAACACTTAGTTAAATGGACATTTAAAG
GTTCCTTCTGGTGAACCATTACTTTACAAGAAGTTAAAATCCCTGTGCTGTATTATATTG
ACTGAAATGCCATGATACATGGAATTTCTAAGACTTGTTCATGGAAATCTAATCAGTTAA
GTTAGCAATTGAAGACCTGCAGGAATAAATGGAGTAAACTTTTGTAATCTAAACTTCACC
TGCATGTTTTTTCTTTACCCCAACCCATTTCTTAACTGTAGGCTCAGTCTTCTCAGTATT
TGGGTTACTGGTTCAGCAGAAGCCAGGAAAAACAATAATTTTGTAGTAATCAGAATGTTA
CTCAATTGTATATTGTTTACTTTATTGTAAATATTGGTGAACAGTGGTCAATAAATAGTT
TTATATTCCTTTAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCAGGGCCGAGGACGCCGCAGATCTGGGACCCGGAGCAGCTCTGAGGCGGTGAATAATAG
CTCTTCAAGTCTGCAATAAAAAATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAA
GAAACAAAATGGAAAAAGTAAAAAAGTTGAAGAGGCAGAGCCTGAAGAATTTGTTGTAGA
AAAAGTACTGGACCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTAAAGTGGAAGGG
GTTTACAGATGCAGACAATACTTGGGAACCTGAAGAAAATTTGGATTGTCCAGAGTTAAT
TGAAGCATTTCTTAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGAGCAAAAAGAAAGTC
ATTATCTGACAGTGAATCTGATGATAGCAAATCAAAGAAGAAAAGAGATGCTGCTGATAA
ACCAAGAGGTTTTGCCAGAGGTCTTGATCCAGAACGAATAATTGGTGCCACAGACAGCAG
TGGAGAATTAATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCGGACTTGGTGCTGGC
AAAAGAGGCAAATATGAAGTGTCCTCAAATTGTAATTGCTTTTTATGAAGAGAGGCTAAC
TTGGCATTCTTGTCCAGAAGATGAAGCTCAATAATTGTTTGCATTGCTTTTTATATATAT
TTATACATATATATAAAATCTGGGTCTCAGTTTTTTTTGATTATTAGTGTGAAGAAATAA
TGACATTCTAATGAAAATCAAGTTTGATATGTTCGTTTTGAAGTAGTATTGGGCAAGTTG
TTGGGGATTTTTGTTTTTTGCATCTGTAGCACTGGTTACTTTGAACAAATAAAAGCTTTC
TGTAGTTGCTTCCTTTAGCAGAAAAGAACATTTGATACTATGGTATATTATTTCCTCGGC
ATTAGAGAACAGCTTTTCTAAATGTTGGGGAAAATCTATAGTCATTGCTCAATCAGAATT
TAGAATTTGCATTTAACTCATAAATGCTTAAGGACCATTCTGGGTTTTTCATGTGTGTAT
ACATAAAATACATAAATATGTGGCTTGGGGTTTTTTTGTTTTGGGGTATTTTTTAATACA
TTTACCAAAACAAAAATAGCATTTCACAACCATGCATAATCCCATGTTTCCGGGATTCCA
TAATTTTAAGCAATATAAGAAATCATTTCGACTTAAACTGAAATTTTTCAAGTCTTAACA
TTTCAAATTAATTTTGTAATTAATTGGACAACTTTAAACAATTTAAATTGGACACTTTAA
AGCAGCCATATCAGAATCTGTATCCATATCTACAGTCATATAAATGCAGTTTTATATCAG
AATCCCTAAAAGGAAAATTTTATCACTACCAACAGCCTCCCCACTCAAATGAAAAAACTA
GAAAAATCCTACTGTGTTTTAAATAAGCCAAGCAACACTTAGTTAAATGGACATTTAAAG
GTTCCTTCTGGTGAACCATTACTTTACAAGAAGTTAAAATCCCTGTGCTGTATTATATTG
ACTGAAATGCCATGATACATGGAATTTCTAAGACTTGTTCATGGAAATCTAATCAGTTAA
GTTAGCAATTGAAGACCTGCAGGAATAAATGGAGTAAACTTTTGTAATCTAAACTTCACC
TGCATGTTTTTTCTTTACCCCAACCCATTTCTTAACTGTAGGCTCAGTCTTCTCAGTATT
TGGGTTACTGGTTCAGCAGAAGCCAGGAAAAACAATAATTTTGTAGTAATCAGAATGTTA
CTCAATTGTATATTGTTTACTTTATTGTAAATATTGGTGAACAGTGGTCAATAAATAGTT
TTATATTCCTTTAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-1001, gnl|bosTau2|chr8 (39857041-39856048) |
|
1-1001, gnl|Hg17|chr6 (116881503-116880519) |
|
1-1001, gnl|Mm7|chr1 (58897697-58898729) |
| |
|
9-895, gnl|bosTau2|chr13 (9455046-9454177) |
|
9-895, gnl|Hg17|chr6 (116881493-116880615) |
|
9-895, gnl|Mm7|chr14 (68637342-68636465) |
| |
|
1395-1828, gnl|bosTau2|chr6 (6747572-6747128) |
|
1395-1828, gnl|Hg17|chr16 (15565988-15566427) |
|
1395-1828, gnl|Mm7|chr5 (150215237-150215601) |
| |
|
1580-1823, gnl|bosTau2|chr13 (9421078-9420838) |
|
1580-1823, gnl|Hg17|chr6 (116879963-116879734) |
|
1580-1823, gnl|Mm7|chr1 (58899189-58899418) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-1001, gnl|bosTau2|chr8 (39857041-39856048) |
|
1-1001, gnl|Hg17|chr6 (116881503-116880519) |
|
1-1001, gnl|Mm7|chr1 (58897697-58898729) |
| |
|
9-895, gnl|bosTau2|chr13 (9455046-9454177) |
|
9-895, gnl|Hg17|chr6 (116881493-116880615) |
|
9-895, gnl|Mm7|chr14 (68637342-68636465) |
| |
|
1395-1828, gnl|bosTau2|chr6 (6747572-6747128) |
|
1395-1828, gnl|Hg17|chr16 (15565988-15566427) |
|
1395-1828, gnl|Mm7|chr5 (150215237-150215601) |
| |
|
1580-1823, gnl|bosTau2|chr13 (9421078-9420838) |
|
1580-1823, gnl|Hg17|chr6 (116879963-116879734) |
|
1580-1823, gnl|Mm7|chr1 (58899189-58899418) |
|
cbl (1.37757) |
|
spl (1.00229) |
|
sug (0.636456) |
|
cty (0.62448) |
|
sin (0.524843) |
|
thg (0.507164) |
|
lin (0.436808) |
|
amn (0.417711) |
|
tes (0.415628) |
|
hea (0.408998) |
|
lyg (0.399308) |
|
ret (0.3862) |
|
tra (0.369276) |
|
rec (0.346141) |
|
ecc (0.345105) |
|
eye (0.341006) |
|
sme (0.305437) |
|
fat (0.294855) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
pla (0.267344) |
|
kid (0.259471) |
|
ova (0.258264) |
|
eru (0.240096) |
|
mgp (0.230681) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
nco (0.161734) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
ski (0.146735) |
|
liv (0.146284) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
cbl (1.37757) |
|
spl (1.00229) |
|
sug (0.636456) |
|
cty (0.62448) |
|
sin (0.524843) |
|
thg (0.507164) |
|
lin (0.436808) |
|
amn (0.417711) |
|
tes (0.415628) |
|
hea (0.408998) |
|
lyg (0.399308) |
|
ret (0.3862) |
|
tra (0.369276) |
|
rec (0.346141) |
|
ecc (0.345105) |
|
eye (0.341006) |
|
sme (0.305437) |
|
fat (0.294855) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
pla (0.267344) |
|
kid (0.259471) |
|
ova (0.258264) |
|
eru (0.240096) |
|
mgp (0.230681) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
nco (0.161734) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
ski (0.146735) |
|
liv (0.146284) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
