Non-Coding RNA Search

Ss1.1-Mixn-0018g22.5

Sequence:


               
               GGGGGACCTGTAGAGAACAACATCAAGTGCAGGAGTGCCACGTTCCCAGGAGATGTGCCA
TCTGACTCTCCAGGGCTGCATCGCTGTGGGCGCGCCAAGCTTCCCCTGGTTACCTGAGCT
GCTCCTGCTGCCTCCCAGCCCCAGCTTCGCCACGGTCACCTGAACCCGGCATTGCTGGTC
TACGCAGTGCAGAAGAAGGACCTGCTGCTGGAGCTGTGGCCGGGGCCCCCTCACAGCCGG
ACAAGGGGACTTGGAAGACAGGGTGATGCTGCAGAAGACCCGGGGTGGGACGCATGGGAA
GAACGCCAAGGACCGGGGCAGGGGAAGTTAGGAATACTTTCCATCCAGTGCCCACTGGTC
CTCTGAAGGGCAAGGGCAGGCCACAGCCCCTTCCTTGCGCCCCCAGCTGGGGCTGCTCCC
AGGGATCAGTCTTGATGAGATGTGGTGGCATTTTACCTGGGAGTGGAGCTGACGATGGAT
AAACCAGGTATCTGACGTGTCTGCCTGCCCGAGGAAGAGGCAGAGTTGGAGAAAGGCAGA
GCGAGGGAGCGCCTGAGAAGAAAGAGGAGATGCAGAACGCCGTTTGATCATCTGCCGCTC
GCCCTGCATTCTCATTCTAGGAGGATGGCATAATTTACAACCCAGTACATGGATGGAGGA
ACTGTAAATTGTAGTCTGGATGTCCCCGGTGCTGTCAAGGAAGAAACTGATGGGCTAGGT
GACTGTACCAGTGTCCCCAGAGGAAAGAGCAGCCTTGCAGCATGGATTTAAATGCATGTG
CATGCATGTAGAGACATGAAAAAAGAGATTTCTGACCATTTTACACAGGAAGTCTGTCAC
TTGGCTGGATTGGGCTTGATTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGACCTGTAGAGAACAACATCAAGTGCAGGAGTGCCACGTTCCCAGGAGATGTGCCA
TCTGACTCTCCAGGGCTGCATCGCTGTGGGCGCGCCAAGCTTCCCCTGGTTACCTGAGCT
GCTCCTGCTGCCTCCCAGCCCCAGCTTCGCCACGGTCACCTGAACCCGGCATTGCTGGTC
TACGCAGTGCAGAAGAAGGACCTGCTGCTGGAGCTGTGGCCGGGGCCCCCTCACAGCCGG
ACAAGGGGACTTGGAAGACAGGGTGATGCTGCAGAAGACCCGGGGTGGGACGCATGGGAA
GAACGCCAAGGACCGGGGCAGGGGAAGTTAGGAATACTTTCCATCCAGTGCCCACTGGTC
CTCTGAAGGGCAAGGGCAGGCCACAGCCCCTTCCTTGCGCCCCCAGCTGGGGCTGCTCCC
AGGGATCAGTCTTGATGAGATGTGGTGGCATTTTACCTGGGAGTGGAGCTGACGATGGAT
AAACCAGGTATCTGACGTGTCTGCCTGCCCGAGGAAGAGGCAGAGTTGGAGAAAGGCAGA
GCGAGGGAGCGCCTGAGAAGAAAGAGGAGATGCAGAACGCCGTTTGATCATCTGCCGCTC
GCCCTGCATTCTCATTCTAGGAGGATGGCATAATTTACAACCCAGTACATGGATGGAGGA
ACTGTAAATTGTAGTCTGGATGTCCCCGGTGCTGTCAAGGAAGAAACTGATGGGCTAGGT
GACTGTACCAGTGTCCCCAGAGGAAAGAGCAGCCTTGCAGCATGGATTTAAATGCATGTG
CATGCATGTAGAGACATGAAAAAAGAGATTTCTGACCATTTTACACAGGAAGTCTGTCAC
TTGGCTGGATTGGGCTTGATTGCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               259-374, - strand, RNAz p=0.63976
               

               
               678-796, + strand, RNAz p=0.992689

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-374, - strand, RNAz p=0.63976
               

               
               678-796, + strand, RNAz p=0.992689

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               278-385, - strand, RNAmicro p=0.990197

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               278-385, - strand, RNAmicro p=0.990197

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               68-864, gnl|bosTau2|chr23 (28477317-28476530)
               

               
               68-864, gnl|Hg17|chr6 (22254842-22255644)
               

               
               68-864, gnl|Mm7|chr13 (27785239-27784411)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-864, gnl|bosTau2|chr23 (28477317-28476530)
               

               
               68-864, gnl|Hg17|chr6 (22254842-22255644)
               

               
               68-864, gnl|Mm7|chr13 (27785239-27784411)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mgp (0.230681)
               

               
               lin (0.145603)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               lin (0.145603)
               

               
               eru (0.120048)

	259-374, - strand, RNAz p=0.63976
	678-796, + strand, RNAz p=0.992689

	68-864, gnl\|bosTau2\|chr23 (28477317-28476530)
	68-864, gnl\|Hg17\|chr6 (22254842-22255644)
	68-864, gnl\|Mm7\|chr13 (27785239-27784411)