Ss1.1-Mixn-0018g24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAAGGCCGCGGCGGCGGGTCCGAGTGGCGGAGGCGGCGCGGGCGGCGGCGGGGGGCCG GGTGGCCGGGGTCCCGGGCCCCGCAGCGGCGGCAGCGGCGGCGGCGGCAGGATGATCAAG CTGTTCTCGCTGAAGCAGCAGAAGAAGGAGGAGGAGTCGGCGGGCGGCACCAAGGGCAGC AGCAAGAAGGCGTCGGCGGCGCAGTTGCGGATCCAGAAGGACATAAACGAGCTGAATCTG CCCAAGACGTGTGACATCAGTTTTTCAGATCCAGACGACCTCCTCAACTTCAAGCTGGTT ATCTGTCCTGATGAGGGCTTCTACAAGAGCGGGAAGTTTGTGTTCAGTTTTAAGGTGGGC CAGGGTTACCCGCATGACCCCCCCAAGGTGAAGTGTGAGACGATGGTTTATCACCCCAAC ATTGACCTCGAGGGCAACGTCTGCCTCAACATCCTCAGAGAGGACTGGAAGCCAGTCCTT ACGATAAACTCCATAATTTATGGCCTGCAGTATCTCTTCTTGGAGCCCAACCCTGAAGAC CCACTGAACAAGGAGGCCGCCGAGGTCCTGCAGAACAACCGGAGGCTGTTTGAGCAGAAC GTGCAGCGCTCCATGCGGGGTGGCTATATCGGCTCCACCTACTTCGAGCGCTGCCTGAAA TAGGGTTGGCGCCTACCCACCCCTGCCGGGGTCACTAGCCCGGGCATCCCCTGCAGATAT TTATTGGGGGCCACAGGTGGGGGGGGCATGGGAGAGCCGGTGGGGGAATCCCATGCCCTG GCCTGCCACCCCTCCCTGCCACCCGCTCCTAGTTTGTTTTTTTTTAAACCACCATGTGAT TAAGGTCGGCACTGCCTCCCCCGACCAGCTCAGCGATGGGAAATGAATTGGCTTGTCTAG CCCCCTGCTGGGTGCTGTCCAGCCCCACTATACTGGGCTCTGGGGTGGGTAGCCAAGGGG ACTGGATGGCCGGGAACCCGGCACCCCACCCCTCCACCACTGGAGGTCCCACCAGGCTAT TAAAGGGGAATGTTACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAAGGCCGCGGCGGCGGGTCCGAGTGGCGGAGGCGGCGCGGGCGGCGGCGGGGGGCCG GGTGGCCGGGGTCCCGGGCCCCGCAGCGGCGGCAGCGGCGGCGGCGGCAGGATGATCAAG CTGTTCTCGCTGAAGCAGCAGAAGAAGGAGGAGGAGTCGGCGGGCGGCACCAAGGGCAGC AGCAAGAAGGCGTCGGCGGCGCAGTTGCGGATCCAGAAGGACATAAACGAGCTGAATCTG CCCAAGACGTGTGACATCAGTTTTTCAGATCCAGACGACCTCCTCAACTTCAAGCTGGTT ATCTGTCCTGATGAGGGCTTCTACAAGAGCGGGAAGTTTGTGTTCAGTTTTAAGGTGGGC CAGGGTTACCCGCATGACCCCCCCAAGGTGAAGTGTGAGACGATGGTTTATCACCCCAAC ATTGACCTCGAGGGCAACGTCTGCCTCAACATCCTCAGAGAGGACTGGAAGCCAGTCCTT ACGATAAACTCCATAATTTATGGCCTGCAGTATCTCTTCTTGGAGCCCAACCCTGAAGAC CCACTGAACAAGGAGGCCGCCGAGGTCCTGCAGAACAACCGGAGGCTGTTTGAGCAGAAC GTGCAGCGCTCCATGCGGGGTGGCTATATCGGCTCCACCTACTTCGAGCGCTGCCTGAAA TAGGGTTGGCGCCTACCCACCCCTGCCGGGGTCACTAGCCCGGGCATCCCCTGCAGATAT TTATTGGGGGCCACAGGTGGGGGGGGCATGGGAGAGCCGGTGGGGGAATCCCATGCCCTG GCCTGCCACCCCTCCCTGCCACCCGCTCCTAGTTTGTTTTTTTTTAAACCACCATGTGAT TAAGGTCGGCACTGCCTCCCCCGACCAGCTCAGCGATGGGAAATGAATTGGCTTGTCTAG CCCCCTGCTGGGTGCTGTCCAGCCCCACTATACTGGGCTCTGGGGTGGGTAGCCAAGGGG ACTGGATGGCCGGGAACCCGGCACCCCACCCCTCCACCACTGGAGGTCCCACCAGGCTAT TAAAGGGGAATGTTACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 522-837, - strand, RNAz p=0.998647 | |
| 876-1040, - strand, RNAz p=0.994924 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 522-837, - strand, RNAz p=0.998647 | |
| 876-1040, - strand, RNAz p=0.994924 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 5-220, gnl|bosTau2|chr18 (56386123-56385908) | |
| 5-220, gnl|Hg17|chr19 (63761670-63761452) | |
| 5-220, gnl|Mm7|chr7 (11624419-11624202) | |
| 353-458, gnl|bosTau2|chr18 (56384468-56384363) | |
| 353-458, gnl|canFam2|chr1 (102472348-102472266) | |
| 353-458, gnl|canFam2|chr1 (102472374-102472259) | |
| 353-458, gnl|danRer3|chrNA (4524149-4524070) | |
| 353-458, gnl|danRer3|chrNA (4524173-4524061) | |
| 353-458, gnl|dasNov1|scaffold_189204 (1365-1441) | |
| 353-458, gnl|dasNov1|scaffold_189204 (1346-1450) | |
| 353-458, gnl|echTel1|scaffold_227330 (1305-1211) | |
| 353-458, gnl|echTel1|scaffold_227330 (1323-1206) | |
| 353-458, gnl|hg17|chr16 (34261787-34261869) | |
| 353-458, gnl|hg17|chr19 (63759842-63759974) | |
| 353-458, gnl|Hg17|chr19 (63759971-63759866) | |
| 353-458, gnl|loxAfr1|scaffold_112304 (1939-2015) | |
| 353-458, gnl|loxAfr1|scaffold_16673 (2827-2922) | |
| 353-458, gnl|mm7|chr7 (11622812-11622894) | |
| 353-458, gnl|mm7|chr7 (11622771-11622901) | |
| 353-458, gnl|Mm7|chr7 (11622898-11622793) | |
| 353-458, gnl|monDom2|scaffold_105 (18041-17916) | |
| 353-458, gnl|oryCun1|scaffold_105624 (516-434) | |
| 353-458, gnl|oryCun1|scaffold_105624 (560-427) | |
| 353-458, gnl|panTro1|chr20 (61516899-61517031) | |
| 353-458, gnl|panTro1|chrUn_random (8600438-8600356) | |
| 353-458, gnl|rheMac2|chr19 (64327755-64327836) | |
| 353-458, gnl|rheMac2|chr19 (64327711-64327843) | |
| 353-458, gnl|rn3|chr1 (72965863-72965781) | |
| 353-458, gnl|rn3|chr1 (72965904-72965774) | |
| 353-458, gnl|tetNig1|chrUn_random (46125642-46125563) | |
| 353-458, gnl|tetNig1|chrUn_random (46125668-46125554) | |
| 353-458, gnl|xenTro1|scaffold_450 (247978-248088) | |
| 353-458, gnl|xenTro1|scaffold_50 (892554-892636) | |
| 522-1040, gnl|bosTau2|chr18 (56383894-56383368) | |
| 522-1040, gnl|Hg17|chr19 (63759409-63758891) | |
| 522-1040, gnl|Mm7|chr7 (11622336-11621819) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-220, gnl|bosTau2|chr18 (56386123-56385908) | |
| 5-220, gnl|Hg17|chr19 (63761670-63761452) | |
| 5-220, gnl|Mm7|chr7 (11624419-11624202) | |
| 353-458, gnl|bosTau2|chr18 (56384468-56384363) | |
| 353-458, gnl|canFam2|chr1 (102472348-102472266) | |
| 353-458, gnl|canFam2|chr1 (102472374-102472259) | |
| 353-458, gnl|danRer3|chrNA (4524149-4524070) | |
| 353-458, gnl|danRer3|chrNA (4524173-4524061) | |
| 353-458, gnl|dasNov1|scaffold_189204 (1365-1441) | |
| 353-458, gnl|dasNov1|scaffold_189204 (1346-1450) | |
| 353-458, gnl|echTel1|scaffold_227330 (1305-1211) | |
| 353-458, gnl|echTel1|scaffold_227330 (1323-1206) | |
| 353-458, gnl|hg17|chr16 (34261787-34261869) | |
| 353-458, gnl|hg17|chr19 (63759842-63759974) | |
| 353-458, gnl|Hg17|chr19 (63759971-63759866) | |
| 353-458, gnl|loxAfr1|scaffold_112304 (1939-2015) | |
| 353-458, gnl|loxAfr1|scaffold_16673 (2827-2922) | |
| 353-458, gnl|mm7|chr7 (11622812-11622894) | |
| 353-458, gnl|mm7|chr7 (11622771-11622901) | |
| 353-458, gnl|Mm7|chr7 (11622898-11622793) | |
| 353-458, gnl|monDom2|scaffold_105 (18041-17916) | |
| 353-458, gnl|oryCun1|scaffold_105624 (516-434) | |
| 353-458, gnl|oryCun1|scaffold_105624 (560-427) | |
| 353-458, gnl|panTro1|chr20 (61516899-61517031) | |
| 353-458, gnl|panTro1|chrUn_random (8600438-8600356) | |
| 353-458, gnl|rheMac2|chr19 (64327755-64327836) | |
| 353-458, gnl|rheMac2|chr19 (64327711-64327843) | |
| 353-458, gnl|rn3|chr1 (72965863-72965781) | |
| 353-458, gnl|rn3|chr1 (72965904-72965774) | |
| 353-458, gnl|tetNig1|chrUn_random (46125642-46125563) | |
| 353-458, gnl|tetNig1|chrUn_random (46125668-46125554) | |
| 353-458, gnl|xenTro1|scaffold_450 (247978-248088) | |
| 353-458, gnl|xenTro1|scaffold_50 (892554-892636) | |
| 522-1040, gnl|bosTau2|chr18 (56383894-56383368) | |
| 522-1040, gnl|Hg17|chr19 (63759409-63758891) | |
| 522-1040, gnl|Mm7|chr7 (11622336-11621819) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| fcc (0.593354) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| ton (0.351) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| jca (0.22792) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| che (0.136314) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.593354) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| ton (0.351) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| jca (0.22792) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| che (0.136314) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |