Non-Coding RNA Search

Ss1.1-Mixn-0018i24.5

Sequence:


               
               CGGGGACGCAAACATGGCGGCGGCCGGCGCTGCTGTTCCTGCTGCCGAACCGAATGAGGA
ACCCGCGCCCGCGACGGAAGCGGTGGCCGCGGCCCGGGAGCGGAGCAGTCTCTTCTTGAG
GGGCCTGGAGCTGGTGAAGCAGGGTGCCGAGGCGCGCGTGTTCCGCGGCCGCTTCCAAGG
CCGCGCGGCCGTGGTGAAGCACCGCTTCCCCAAGGGCTACCGGCACCCGGCGCTGGAGGC
GCGGCTCGGCCGGCGACGGACGGTGCAGGAGGCCCGGGCGCTGCTCCGCTGCCGCCGCGC
AGGGATATGTGCCCCGGTTGTCTTTTTTGTGGACTATGCTTCCAACTGTTTATTCATGGA
AGAAATTGAAGGCTCAGTGACTGTTCGAGATTATATAGAATCCACTATGGAGACTGAAAA
CTCTCCCCAGAGTCTCCTCGGCTTAGCCAAGAAAATCGGGCAGGTTTTGGCTCGCATGCA
CGACGAAGACCTCATTCACGGTGATCTCACCACGTCCAACATGCTCCTGAAACCCCCGCT
GGAAGAACTGAACATCGTGCTCATAGACTTTGGGCTGAGTTTCATTTCAGCACTTCCAGA
AGATAAGGGAGTGGACCTGTACGTGCTAGAGAAAGCCTTCCTCAGTACCCATCCCAACAC
CGAGACTGTATTTGAAGCCTTTCTAAAGAGCTATGCCGCCGCCTCCAAAAAGGCCAGGCC
AGTGCTAAAAAAATTAGATGAGGTGCGCCTGCGAGGGAGAAAGAGGTCCATGGTTGGGTA
GAAGAACGTGCGTGACGACCACAGACAGTTCAGCCACTCACCTCACAGTAAATTTGAAGG
AATGCTATGAATATGGGATTCGACCTAAATAAAGGTGGTGAAGTATTTTAAGTGCTGTCT
GTGATCCCGCTTGTCGAGTGGTGTTATCCACTGTTGACTGTTGTCAAGAGCTTGCTGTGT
CCCTAAGACACGTTCTGGCAGAACTGGGTATTCAGACTACCCCTCAGACAGGCTTTCTCT
GCAATTGTGACATGTGTACCTCAGATCCAAGGGCGGCGTTACCAAACATTGAGCCTCATA
CTGAGAACATTATCCTCTTTTTAGTCCTTTGGTTGAGACAAGGCCAGTCTCAGCTGGTGA
CAGTACGTCTTTATCAGCCCTCTTACCTAGTGTTTTTTTTTTTGTTGTTGTGTTCTTGAC
ATATTCCACTTGAAACGAGTACAGTGCTATACAACCAGCATTTTTAAAAAGAAATGGAAT
CAGGGATTAGAAAATATCAGCGCACATTACATGTAGTATTGTAAGTATTGTTTTATGAAA
CTTGTTTCATTGTGTATATAGAAGTATACTAGGTTTTGCTCTAAAATACATTTCTTTTTG
AGGGGCATGGTAAAAAAAAAAGATGAAAAATGCTACTTAACTGCAGTTTTTCTTTTTTGA
AAGAGCAGGCTCATAACTTTCAGGCAACTGAAATTTTGTACAAGACTTTTTATTTTTGTT
TGCTCTGTGTTTTTATAGTTACCTTCTGATTAAGACAAGCGATTGGTATAAAGTGCTTTT
TAGTTTCTGTGGGTAATAAAGGTAAGTTGATTTATAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGGACGCAAACATGGCGGCGGCCGGCGCTGCTGTTCCTGCTGCCGAACCGAATGAGGA
ACCCGCGCCCGCGACGGAAGCGGTGGCCGCGGCCCGGGAGCGGAGCAGTCTCTTCTTGAG
GGGCCTGGAGCTGGTGAAGCAGGGTGCCGAGGCGCGCGTGTTCCGCGGCCGCTTCCAAGG
CCGCGCGGCCGTGGTGAAGCACCGCTTCCCCAAGGGCTACCGGCACCCGGCGCTGGAGGC
GCGGCTCGGCCGGCGACGGACGGTGCAGGAGGCCCGGGCGCTGCTCCGCTGCCGCCGCGC
AGGGATATGTGCCCCGGTTGTCTTTTTTGTGGACTATGCTTCCAACTGTTTATTCATGGA
AGAAATTGAAGGCTCAGTGACTGTTCGAGATTATATAGAATCCACTATGGAGACTGAAAA
CTCTCCCCAGAGTCTCCTCGGCTTAGCCAAGAAAATCGGGCAGGTTTTGGCTCGCATGCA
CGACGAAGACCTCATTCACGGTGATCTCACCACGTCCAACATGCTCCTGAAACCCCCGCT
GGAAGAACTGAACATCGTGCTCATAGACTTTGGGCTGAGTTTCATTTCAGCACTTCCAGA
AGATAAGGGAGTGGACCTGTACGTGCTAGAGAAAGCCTTCCTCAGTACCCATCCCAACAC
CGAGACTGTATTTGAAGCCTTTCTAAAGAGCTATGCCGCCGCCTCCAAAAAGGCCAGGCC
AGTGCTAAAAAAATTAGATGAGGTGCGCCTGCGAGGGAGAAAGAGGTCCATGGTTGGGTA
GAAGAACGTGCGTGACGACCACAGACAGTTCAGCCACTCACCTCACAGTAAATTTGAAGG
AATGCTATGAATATGGGATTCGACCTAAATAAAGGTGGTGAAGTATTTTAAGTGCTGTCT
GTGATCCCGCTTGTCGAGTGGTGTTATCCACTGTTGACTGTTGTCAAGAGCTTGCTGTGT
CCCTAAGACACGTTCTGGCAGAACTGGGTATTCAGACTACCCCTCAGACAGGCTTTCTCT
GCAATTGTGACATGTGTACCTCAGATCCAAGGGCGGCGTTACCAAACATTGAGCCTCATA
CTGAGAACATTATCCTCTTTTTAGTCCTTTGGTTGAGACAAGGCCAGTCTCAGCTGGTGA
CAGTACGTCTTTATCAGCCCTCTTACCTAGTGTTTTTTTTTTTGTTGTTGTGTTCTTGAC
ATATTCCACTTGAAACGAGTACAGTGCTATACAACCAGCATTTTTAAAAAGAAATGGAAT
CAGGGATTAGAAAATATCAGCGCACATTACATGTAGTATTGTAAGTATTGTTTTATGAAA
CTTGTTTCATTGTGTATATAGAAGTATACTAGGTTTTGCTCTAAAATACATTTCTTTTTG
AGGGGCATGGTAAAAAAAAAAGATGAAAAATGCTACTTAACTGCAGTTTTTCTTTTTTGA
AAGAGCAGGCTCATAACTTTCAGGCAACTGAAATTTTGTACAAGACTTTTTATTTTTGTT
TGCTCTGTGTTTTTATAGTTACCTTCTGATTAAGACAAGCGATTGGTATAAAGTGCTTTT
TAGTTTCTGTGGGTAATAAAGGTAAGTTGATTTATAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|16307277|gb|AAH09727.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16307277|gb|AAH09727.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               300-1442, gnl|bosTau2|chr13 (56475314-56474193)
               

               
               300-1442, gnl|Hg17|chr20 (44749280-44748184)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               300-1442, gnl|bosTau2|chr13 (56475314-56474193)
               

               
               300-1442, gnl|Hg17|chr20 (44749280-44748184)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cbe (1.19617)
               

               
               pty (0.285429)
               

               
               lyg (0.266205)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.19617)
               

               
               pty (0.285429)
               

               
               lyg (0.266205)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	300-1442, gnl\|bosTau2\|chr13 (56475314-56474193)
	300-1442, gnl\|Hg17\|chr20 (44749280-44748184)

	cbe (1.19617)
	pty (0.285429)
	lyg (0.266205)
	cty (0.20816)
	fty (0.17584)
	rec (0.17307)
	cki (0.165235)
	nco (0.161734)
	lin (0.145603)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	ret (0.128733)
	thg (0.126791)
	tra (0.123092)
	jej (0.0989218)
	eje (0.0988338)