Non-Coding RNA Search

Ss1.1-Mixn-0018j10.5

Sequence:


               
               GGCCTCTCCACCTCCCTCTCAGCTGTGCCTTAGCAAGACCCACCAGTCTAGGCCTCCCTA
GGCTTCCCTAGGCGGCTGGATTCCAGGATTTGTAGTCCTGGGTGAACTCCAGGCAGGTCC
CCCATCCTCCTTGCTGAACTGAGGAGTGGTCTGCCTGGCCAGCCGGGGTGCAGGGTTGCT
TCAGCCGGGGACCTGCACATCAGCGGGAAATCTCCCAGGCCAGTTGCCTTTTGCACTTCC
TGTCCCTGGTGGGTCTCCCTTGCCTTGCCTCCCCTTCCTGATGCCCTAGAAACTTCTGGA
ATTGACTGTGACCGCTTGGATGTTGCCCCCCCCACCACCACACAGACGGCCCTGTTCAGG
CATCTCCACGGAGCCCCTGCTGGAGGGGCCCTGAAGATGGTGCTGGCTGGCGCCTCAGGC
TGCTGCTCAGATGCTCACCCCAGTGGAGACCCTGCTGGTGTGGCTGCTGATGGGACCCAT
GGGAGTGACAGCAGTGGGTTGGGCTAAGTGTCCAGGCTAGGGGTGGCATCTGAGATGGTC
TCTCCGGGTCTCAGGGGTTCCAGCCTGTTGAATGTCCCCGCCAGCCTTGTTAGTGATAGC
TTGAATCTTTGGGTTGGTGACATCCTGAGACCACCCCACTAGGATAGCTCGGACATCCCC
ATCGGCTTCCTTGATGACTCACCCCAGACACCCGTTGTTGGGGCCAGCTCCCCAGCTCGC
CCCTCTGTCCCTCCCTCTGGCAGCACCGTCCGGCTCCTCGAACATTGAGGCCAGTAGCAA
GTGACCCTGTGGTGTTTCACATGGGCCTTTCCAAGCACCAAGGTTTTGTTTCCTACTTGA
GTTTAAGAAATAAACCTGCAGAGTGTCTGGTGCCTGTTGGGAGCTCAGTCACTCACCGTT
TGTTCCCATGTGGCACAGAACCCTTTCTGAGTGTCAGAAGGCAGGACCCTCACTGGGGAA
CACCCGGTTGCCAGACATGAGCCAAACACGCTTGGCCTTTTCTTACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTCTCCACCTCCCTCTCAGCTGTGCCTTAGCAAGACCCACCAGTCTAGGCCTCCCTA
GGCTTCCCTAGGCGGCTGGATTCCAGGATTTGTAGTCCTGGGTGAACTCCAGGCAGGTCC
CCCATCCTCCTTGCTGAACTGAGGAGTGGTCTGCCTGGCCAGCCGGGGTGCAGGGTTGCT
TCAGCCGGGGACCTGCACATCAGCGGGAAATCTCCCAGGCCAGTTGCCTTTTGCACTTCC
TGTCCCTGGTGGGTCTCCCTTGCCTTGCCTCCCCTTCCTGATGCCCTAGAAACTTCTGGA
ATTGACTGTGACCGCTTGGATGTTGCCCCCCCCACCACCACACAGACGGCCCTGTTCAGG
CATCTCCACGGAGCCCCTGCTGGAGGGGCCCTGAAGATGGTGCTGGCTGGCGCCTCAGGC
TGCTGCTCAGATGCTCACCCCAGTGGAGACCCTGCTGGTGTGGCTGCTGATGGGACCCAT
GGGAGTGACAGCAGTGGGTTGGGCTAAGTGTCCAGGCTAGGGGTGGCATCTGAGATGGTC
TCTCCGGGTCTCAGGGGTTCCAGCCTGTTGAATGTCCCCGCCAGCCTTGTTAGTGATAGC
TTGAATCTTTGGGTTGGTGACATCCTGAGACCACCCCACTAGGATAGCTCGGACATCCCC
ATCGGCTTCCTTGATGACTCACCCCAGACACCCGTTGTTGGGGCCAGCTCCCCAGCTCGC
CCCTCTGTCCCTCCCTCTGGCAGCACCGTCCGGCTCCTCGAACATTGAGGCCAGTAGCAA
GTGACCCTGTGGTGTTTCACATGGGCCTTTCCAAGCACCAAGGTTTTGTTTCCTACTTGA
GTTTAAGAAATAAACCTGCAGAGTGTCTGGTGCCTGTTGGGAGCTCAGTCACTCACCGTT
TGTTCCCATGTGGCACAGAACCCTTTCTGAGTGTCAGAAGGCAGGACCCTCACTGGGGAA
CACCCGGTTGCCAGACATGAGCCAAACACGCTTGGCCTTTTCTTACAG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               80-267, - strand, RNAz p=0.988801
               

               
               427-567, - strand, RNAz p=0.999679
               

               
               608-914, - strand, RNAz p=0.992931

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-267, - strand, RNAz p=0.988801
               

               
               427-567, - strand, RNAz p=0.999679
               

               
               608-914, - strand, RNAz p=0.992931

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1008, gnl|bosTau2|chr7 (4885449-4884461)
               

               
               1-1008, gnl|Hg17|chr19 (17477130-17478061)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr7 (4885449-4884461)
               

               
               1-1008, gnl|Hg17|chr19 (17477130-17478061)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               ebs (0.118301)

	80-267, - strand, RNAz p=0.988801
	427-567, - strand, RNAz p=0.999679
	608-914, - strand, RNAz p=0.992931

	1-1008, gnl\|bosTau2\|chr7 (4885449-4884461)
	1-1008, gnl\|Hg17\|chr19 (17477130-17478061)