Non-Coding RNA Search

Ss1.1-Mixn-0018k12.5

Sequence:


               
               GATGAGTTTTTTTTGGATTTTTGGATACAAGCCCCTTCATACACCTCCTGAAAGTCATAG
TAACAGACAGTCATGATGCAAGATCCCTGCAGTCAACAGCTGGCTGCTTTCGTAGTGCTG
GCAGATTTCTTGTTGACTTTTAAACGTATTCTGTTTGAGATTCTTAGGAAGATATTGATC
TGACCTTACACTTGTCTTTTTCTTCACTTATTGAAATCAACTAATCAAATAACTTCCATG
TACAAATGTCCCGTTTGGGAAGTATATTCAAAGCCACTGCTGTATGGCTGGGTTCAGCCC
AGCTTGTTTGATTTTTGATTTTTGATTTTTTTTTTTTTCCTTTGGAAGTGAGAGTACAGT
TCCATCTACCTACATGTTTCTTCTTGTCATCCCGATAGCTCTCCTTGGCTTTCAGAGAGC
TACAGGAACACTGTGTATGTGAATCACTCACTCAATGAATTTGGCTTGAATGCTGTGTCT
GACATTCCACCCTCTTTGAAAATAATGAACCCACGCATCATTGTTTACATCATTTGTAGT
AGTTGCACATATAATATATTTAATGGAACAGAGGTTGTGTTTTAATTCTATAAAGACTCA
AAGGCAGATATAAGGGTGGTTATTCCATTGAGTGGAGACCACGCAATTCAATATTGTGAC
GACTTCTAAGTGAAAATCATGTAGAAACTAGTTTGGGCAGATTTTTCTTGACAATGTGAC
CAGACTGAATTTCCTCATAAAGAAAAAAATGTGTGTGCCTCGTGTCTGTGTTTCTCTTTT
TCTCTGAAAGGATTAACGGACCTGAAGCTTTGGGTCACCCCGAGCCTTCTTTTATGCTGC
CAACATTTTCTTATTTAGCTTTTCTGTCCTAAGCCATTGGAAACAAAAGAGCTTCCCCAT
GGCAATCTGGTCTTGGATATATTTTGTTGCCGTGGATGCTTCTCTTGAAAAATTGGCAAA
AGCTGGAAATTCAAGGCAGATCCCCACGAGGTGCTTCAAGGGCACTTTTAACAAGACGTG
AAAGCACTTGGGGTCTACCCCACTTGGCCCAGCAAACCCCAGAATTCTTCCCCTCCACCT
CCAGTCAATTGGTAGCTCCATTTCAGAATCCTAACCATCACTGAAAAATTAATGACTAGT
CAGAAGATTGACAAACTAACTGAAATTGTAATACACACTAGGATGGTATGACCAGAGTAT
CATTACGAAAGGGATAGAGCTTGGAGATGTGTCTTTTTAAACATCATTTATGGAAGCTTC
TAACTCTCGATGCTTTTATAGAGAAATATGAACTGTATCGTTGAATCATAGTTTATAAAA
AAGGAACAAAATGAACCAAGATTGGCAATCTTTGCTGATCTCTTAGAAATACCTTTTCTG
GAGAAAAGTTCGCATGAAGTGCAATAAGCTTGTAAAGGTAAATAGTTATTAATATTTCTA
TGAGATAAAGAATTATGATTGTAAGTATTAACTGACTGGCAGTTTTTATTTCAGTATTAA
CACAGTGTCTTGCCAGCGTTGGAGTCAATGTATTATTTCGATTCAACTGGATGAAATGTT
AAATAAACTCAGAATGAAAATAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGAGTTTTTTTTGGATTTTTGGATACAAGCCCCTTCATACACCTCCTGAAAGTCATAG
TAACAGACAGTCATGATGCAAGATCCCTGCAGTCAACAGCTGGCTGCTTTCGTAGTGCTG
GCAGATTTCTTGTTGACTTTTAAACGTATTCTGTTTGAGATTCTTAGGAAGATATTGATC
TGACCTTACACTTGTCTTTTTCTTCACTTATTGAAATCAACTAATCAAATAACTTCCATG
TACAAATGTCCCGTTTGGGAAGTATATTCAAAGCCACTGCTGTATGGCTGGGTTCAGCCC
AGCTTGTTTGATTTTTGATTTTTGATTTTTTTTTTTTTCCTTTGGAAGTGAGAGTACAGT
TCCATCTACCTACATGTTTCTTCTTGTCATCCCGATAGCTCTCCTTGGCTTTCAGAGAGC
TACAGGAACACTGTGTATGTGAATCACTCACTCAATGAATTTGGCTTGAATGCTGTGTCT
GACATTCCACCCTCTTTGAAAATAATGAACCCACGCATCATTGTTTACATCATTTGTAGT
AGTTGCACATATAATATATTTAATGGAACAGAGGTTGTGTTTTAATTCTATAAAGACTCA
AAGGCAGATATAAGGGTGGTTATTCCATTGAGTGGAGACCACGCAATTCAATATTGTGAC
GACTTCTAAGTGAAAATCATGTAGAAACTAGTTTGGGCAGATTTTTCTTGACAATGTGAC
CAGACTGAATTTCCTCATAAAGAAAAAAATGTGTGTGCCTCGTGTCTGTGTTTCTCTTTT
TCTCTGAAAGGATTAACGGACCTGAAGCTTTGGGTCACCCCGAGCCTTCTTTTATGCTGC
CAACATTTTCTTATTTAGCTTTTCTGTCCTAAGCCATTGGAAACAAAAGAGCTTCCCCAT
GGCAATCTGGTCTTGGATATATTTTGTTGCCGTGGATGCTTCTCTTGAAAAATTGGCAAA
AGCTGGAAATTCAAGGCAGATCCCCACGAGGTGCTTCAAGGGCACTTTTAACAAGACGTG
AAAGCACTTGGGGTCTACCCCACTTGGCCCAGCAAACCCCAGAATTCTTCCCCTCCACCT
CCAGTCAATTGGTAGCTCCATTTCAGAATCCTAACCATCACTGAAAAATTAATGACTAGT
CAGAAGATTGACAAACTAACTGAAATTGTAATACACACTAGGATGGTATGACCAGAGTAT
CATTACGAAAGGGATAGAGCTTGGAGATGTGTCTTTTTAAACATCATTTATGGAAGCTTC
TAACTCTCGATGCTTTTATAGAGAAATATGAACTGTATCGTTGAATCATAGTTTATAAAA
AAGGAACAAAATGAACCAAGATTGGCAATCTTTGCTGATCTCTTAGAAATACCTTTTCTG
GAGAAAAGTTCGCATGAAGTGCAATAAGCTTGTAAAGGTAAATAGTTATTAATATTTCTA
TGAGATAAAGAATTATGATTGTAAGTATTAACTGACTGGCAGTTTTTATTTCAGTATTAA
CACAGTGTCTTGCCAGCGTTGGAGTCAATGTATTATTTCGATTCAACTGGATGAAATGTT
AAATAAACTCAGAATGAAAATAAAAAAAAAAAAAAA

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               11-309, gnl|bosTau2|chr10 (745475-745171)
               

               
               11-309, gnl|Hg17|chr5 (174886888-174887192)
               


               
               335-1016, gnl|bosTau2|chr10 (745176-744501)
               

               
               335-1016, gnl|Hg17|chr5 (174887187-174888477)
               

               
               335-1016, gnl|Mm7|chr13 (53148712-53149355)
               


               
               1087-1584, gnl|bosTau2|chr10 (744203-743721)
               

               
               1087-1584, gnl|Hg17|chr5 (174888541-174889351)
               

               
               1087-1584, gnl|Mm7|chr13 (53149410-53149876)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-309, gnl|bosTau2|chr10 (745475-745171)
               

               
               11-309, gnl|Hg17|chr5 (174886888-174887192)
               


               
               335-1016, gnl|bosTau2|chr10 (745176-744501)
               

               
               335-1016, gnl|Hg17|chr5 (174887187-174888477)
               

               
               335-1016, gnl|Mm7|chr13 (53148712-53149355)
               


               
               1087-1584, gnl|bosTau2|chr10 (744203-743721)
               

               
               1087-1584, gnl|Hg17|chr5 (174888541-174889351)
               

               
               1087-1584, gnl|Mm7|chr13 (53149410-53149876)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

Help | Less info


               
               fco (0.78604)
               

               
               kid (0.389206)
               

               
               sin (0.349895)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               clu (0.239292)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               kid (0.389206)
               

               
               sin (0.349895)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               clu (0.239292)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	11-309, gnl\|bosTau2\|chr10 (745475-745171)
	11-309, gnl\|Hg17\|chr5 (174886888-174887192)

	335-1016, gnl\|bosTau2\|chr10 (745176-744501)
	335-1016, gnl\|Hg17\|chr5 (174887187-174888477)
	335-1016, gnl\|Mm7\|chr13 (53148712-53149355)

	1087-1584, gnl\|bosTau2\|chr10 (744203-743721)
	1087-1584, gnl\|Hg17\|chr5 (174888541-174889351)
	1087-1584, gnl\|Mm7\|chr13 (53149410-53149876)

	fco (0.78604)
	kid (0.389206)
	sin (0.349895)
	ski (0.29347)
	lnt (0.284616)
	clu (0.239292)
	pan (0.23596)
	ecc (0.23007)
	spc (0.226732)
	hea (0.204499)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	fhi (0.169578)
	lun (0.150489)
	fat (0.147427)
	spl (0.143184)
	pty (0.142714)
	lyg (0.133103)
	sug (0.127291)
	thg (0.126791)
	eru (0.120048)
	pgl (0.118483)
	nbm (0.0993246)
	jej (0.0989218)