Non-Coding RNA Search

Ss1.1-Mixn-0018l12.5

Sequence:


               
               CATCCCCCTGCAGCTGCTCACCACGCTCAGCCCGCTGGAGATGGAGCTGCGGACGTGCGG
CCTCCCCTACATCAACCTTGAGTTCCTGAAGGCCCACACCATGTACCAGGTGGGGCTGAT
GGAGACAGACCAGCACATCGAGTTCTTCTGGGGGGCACTGGAGATGTTTGCCCAGGAGGA
GCTGTGCAAGTTCATCAAGTTTGCCTGCAACCAGGAGCGCATCCCATTCACCTGCCCCTG
CAAAGACGGGGGCCCTGACACAGCCCATGTGCCCCCGTACCCGATGAAGATCGCCCCCCC
GGATGGCACAGCAGGTTCCCCAGACTCTCGCTACATCCGCGTGGAGACCTGCATGTTCAT
GATCAAGCTTCCCCAGTACTCCTCTCTGGAAATCATGCTGGAGAAACTTCGTTGTGCCAT
TCACTACCGCGAAGACCCCCTGAGTGGCTGAGGGGACGGAGCCCGAGCTAGGCCGTCACC
GAGACACCGCTCTGCCGGCTTGGGAAGCCTGCCGCTGTGGGCACGTCCCTCCGGGGCCCT
GTGTGAGGAGTTGGCGACATTTTGCTTTTCCGAACTTTTGTCCACATTCCAGGGCTTCCT
GGAAGACTTGACCTTATGTATTTGTACGTTTCGTGATGGGTTGGTTCTTTTGCTACCTTG
TTTGTGGTATGTTTGTAGGATAGTTTAGTTCCCAGACAGCTCGTGTCTCATTTGATCTTC
CTGGACATTTTCCCTTCGTGGCCACTGGATTTGGATGCCCTGAGGCCCCAGTTGGTTCCA
CATCATAGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCCCCTGCAGCTGCTCACCACGCTCAGCCCGCTGGAGATGGAGCTGCGGACGTGCGG
CCTCCCCTACATCAACCTTGAGTTCCTGAAGGCCCACACCATGTACCAGGTGGGGCTGAT
GGAGACAGACCAGCACATCGAGTTCTTCTGGGGGGCACTGGAGATGTTTGCCCAGGAGGA
GCTGTGCAAGTTCATCAAGTTTGCCTGCAACCAGGAGCGCATCCCATTCACCTGCCCCTG
CAAAGACGGGGGCCCTGACACAGCCCATGTGCCCCCGTACCCGATGAAGATCGCCCCCCC
GGATGGCACAGCAGGTTCCCCAGACTCTCGCTACATCCGCGTGGAGACCTGCATGTTCAT
GATCAAGCTTCCCCAGTACTCCTCTCTGGAAATCATGCTGGAGAAACTTCGTTGTGCCAT
TCACTACCGCGAAGACCCCCTGAGTGGCTGAGGGGACGGAGCCCGAGCTAGGCCGTCACC
GAGACACCGCTCTGCCGGCTTGGGAAGCCTGCCGCTGTGGGCACGTCCCTCCGGGGCCCT
GTGTGAGGAGTTGGCGACATTTTGCTTTTCCGAACTTTTGTCCACATTCCAGGGCTTCCT
GGAAGACTTGACCTTATGTATTTGTACGTTTCGTGATGGGTTGGTTCTTTTGCTACCTTG
TTTGTGGTATGTTTGTAGGATAGTTTAGTTCCCAGACAGCTCGTGTCTCATTTGATCTTC
CTGGACATTTTCCCTTCGTGGCCACTGGATTTGGATGCCCTGAGGCCCCAGTTGGTTCCA
CATCATAGAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5911937|emb|CAB55944.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5911937|emb|CAB55944.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               504-663, + strand, RNAz p=0.719667

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               504-663, + strand, RNAz p=0.719667

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB014514, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB014514, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               308-758, gnl|bosTau2|chr17 (36991543-36991095)
               

               
               308-758, gnl|Hg17|chr12 (111063054-111062605)
               

               
               308-758, gnl|Mm7|chr5 (120600448-120600882)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               308-758, gnl|bosTau2|chr17 (36991543-36991095)
               

               
               308-758, gnl|Hg17|chr12 (111063054-111062605)
               

               
               308-758, gnl|Mm7|chr5 (120600448-120600882)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	308-758, gnl\|bosTau2\|chr17 (36991543-36991095)
	308-758, gnl\|Hg17\|chr12 (111063054-111062605)
	308-758, gnl\|Mm7\|chr5 (120600448-120600882)