Ss1.1-Mixn-0018m10.5
|
GAAACACGGGATAATACTCAATTCAGAAACAGCCACCAATGGCGAGACCTCAGACCCTCT
CAGCCGTGTGGAACACCCAGGGTCTACGAAGATGACGAAGGAGGAGGTCGGCGCTCCCCA
GGCCCCCGGGGACGGGACGCTAGATATCAGGTTGAAAAAGCTTGTTGACGAACGGGAAGG
CTTATTGGAACAGATTAAGAAACTTCGAGGGCAGCTGGAAGAGAGACAGAAGAATGTCAG
ACTAGACAGTCTGCGCCCTGAAGACGGTGTCTTGGAAAACGGGACAGACGTGCATGTGAT
GGATCTGCACAGGGATGCCAACAGACAGATCAGCGACCTCAAATTTAAACTTGCAAAATC
TGAGCAAGAGATAACTGCATTAGAACAAAATGTAATAAGGTTAGAAAGTCAAGTATCACG
TTATAAACTGGCTGCTGAAAATGCTGAAAAAATAGAAGACGAACTTAAAGCTGAAAAACG
GAAACTGCAAAGAGAGCTTCGCTCTGCATTGGACAAGACGGAAGAGCTCGAGGTGAGCAA
CGGCCACTTAGTGAAGCGTCTGGAAAAAATGAAAGCAAACAGGAGTGTCCACTTGTCCCA
GCAGTAGACGCCAGCTCTGAACAGGACACGGGTGGGTGCATGGCCAGCGTGGTTTCGTAG
GCTTTTCTGTCGCGGTCTGGGAGCGCTGCTTCTTCCCCTGCTTCTGCGAGAACACCCCGG
CGGACACCGGGCCCCCTGCCAGGAGCCCCCGCAGCCACCAGATGCCTCCGTCTGCAGACC
GCCCCGAACCGACCCTGCAGGTCACTGAAGAAGCACACGGGCCCAGAGCTCTGCATCCGG
CAGCGCAGCAGCCTCTTGGTGCCGCGGAAAACGGCAATCAAAGTAACGATGCAGGTGGGA
CCTGAGTTTTCTTGCCCTGTGTCTTCTGAAAATTAAGGGCAACTGTGACCGTGTTGGGAC
TTCCTTTTGCGGCCGAATCTACAACTTGGGCGACTTCAGTAGCATCTCTTAGTCGACGCT
TTTCACACACACAACACTGTGGAACCACAAGCCGTTACCAAGCAAAACTCTTTCACTAGA
AACACGGGGATATGATCTAGAAGCAAAAGTGACCTTAAGAAGACTTTCCAGGCGACAGTG
AAGCTTTTCTAAGGGATTTTTGCATCCGTTCAGTCAAAAGAATACTTTTTTCCAGGGTAA
TTAGGCAACAGCTTCACTGAAAACGACAGCTTTTCTTCGCATTATTGAATCCTTCTATTT
GGAATTGAAGTTGTTAACTTCTTTTAAAGAATGTACTGTTAGAAAAATTAAAAAACGAAA
AATGTTAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAACACGGGATAATACTCAATTCAGAAACAGCCACCAATGGCGAGACCTCAGACCCTCT
CAGCCGTGTGGAACACCCAGGGTCTACGAAGATGACGAAGGAGGAGGTCGGCGCTCCCCA
GGCCCCCGGGGACGGGACGCTAGATATCAGGTTGAAAAAGCTTGTTGACGAACGGGAAGG
CTTATTGGAACAGATTAAGAAACTTCGAGGGCAGCTGGAAGAGAGACAGAAGAATGTCAG
ACTAGACAGTCTGCGCCCTGAAGACGGTGTCTTGGAAAACGGGACAGACGTGCATGTGAT
GGATCTGCACAGGGATGCCAACAGACAGATCAGCGACCTCAAATTTAAACTTGCAAAATC
TGAGCAAGAGATAACTGCATTAGAACAAAATGTAATAAGGTTAGAAAGTCAAGTATCACG
TTATAAACTGGCTGCTGAAAATGCTGAAAAAATAGAAGACGAACTTAAAGCTGAAAAACG
GAAACTGCAAAGAGAGCTTCGCTCTGCATTGGACAAGACGGAAGAGCTCGAGGTGAGCAA
CGGCCACTTAGTGAAGCGTCTGGAAAAAATGAAAGCAAACAGGAGTGTCCACTTGTCCCA
GCAGTAGACGCCAGCTCTGAACAGGACACGGGTGGGTGCATGGCCAGCGTGGTTTCGTAG
GCTTTTCTGTCGCGGTCTGGGAGCGCTGCTTCTTCCCCTGCTTCTGCGAGAACACCCCGG
CGGACACCGGGCCCCCTGCCAGGAGCCCCCGCAGCCACCAGATGCCTCCGTCTGCAGACC
GCCCCGAACCGACCCTGCAGGTCACTGAAGAAGCACACGGGCCCAGAGCTCTGCATCCGG
CAGCGCAGCAGCCTCTTGGTGCCGCGGAAAACGGCAATCAAAGTAACGATGCAGGTGGGA
CCTGAGTTTTCTTGCCCTGTGTCTTCTGAAAATTAAGGGCAACTGTGACCGTGTTGGGAC
TTCCTTTTGCGGCCGAATCTACAACTTGGGCGACTTCAGTAGCATCTCTTAGTCGACGCT
TTTCACACACACAACACTGTGGAACCACAAGCCGTTACCAAGCAAAACTCTTTCACTAGA
AACACGGGGATATGATCTAGAAGCAAAAGTGACCTTAAGAAGACTTTCCAGGCGACAGTG
AAGCTTTTCTAAGGGATTTTTGCATCCGTTCAGTCAAAAGAATACTTTTTTCCAGGGTAA
TTAGGCAACAGCTTCACTGAAAACGACAGCTTTTCTTCGCATTATTGAATCCTTCTATTT
GGAATTGAAGTTGTTAACTTCTTTTAAAGAATGTACTGTTAGAAAAATTAAAAAACGAAA
AATGTTAAAAAAAAAAAAAAAAAA
|
|
gi|62822124|gb|AAY14673.1| |
Protein identifier
|
gi|62822124|gb|AAY14673.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
191-312, gnl|bosTau2|chr3 (84275872-84275993) |
|
191-312, gnl|canFam2|chr25 (51388933-51389078) |
|
191-312, gnl|danRer3|chr13 (43065567-43065442) |
|
191-312, gnl|dasNov1|scaffold_20021 (1153-1010) |
|
191-312, gnl|echTel1|scaffold_57059 (715-858) |
|
191-312, gnl|fr1|chrUn (200062323-200062182) |
|
191-312, gnl|galGal2|chr7 (4593071-4592946) |
|
191-312, gnl|hg17|chr2 (238462721-238462866) |
|
191-312, gnl|Hg17|chr2 (238462721-238462842) |
|
191-312, gnl|mm7|chr1 (91030145-91030290) |
|
191-312, gnl|Mm7|chr1 (91030145-91030266) |
|
191-312, gnl|monDom2|scaffold_184 (944081-943936) |
|
191-312, gnl|oryCun1|scaffold_190321 (4373-4228) |
|
191-312, gnl|panTro1|chr13 (129407308-129407453) |
|
191-312, gnl|rheMac2|chr12 (101632504-101632649) |
|
191-312, gnl|rn3|chr9 (90556998-90557143) |
|
191-312, gnl|tetNig1|chr17 (1028363-1028232) |
| |
|
495-1330, gnl|bosTau2|chr3 (84280421-84281276) |
|
495-1330, gnl|Hg17|chr2 (238470063-238470951) |
|
495-1330, gnl|Mm7|chr1 (91035810-91036667) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
191-312, gnl|bosTau2|chr3 (84275872-84275993) |
|
191-312, gnl|canFam2|chr25 (51388933-51389078) |
|
191-312, gnl|danRer3|chr13 (43065567-43065442) |
|
191-312, gnl|dasNov1|scaffold_20021 (1153-1010) |
|
191-312, gnl|echTel1|scaffold_57059 (715-858) |
|
191-312, gnl|fr1|chrUn (200062323-200062182) |
|
191-312, gnl|galGal2|chr7 (4593071-4592946) |
|
191-312, gnl|hg17|chr2 (238462721-238462866) |
|
191-312, gnl|Hg17|chr2 (238462721-238462842) |
|
191-312, gnl|mm7|chr1 (91030145-91030290) |
|
191-312, gnl|Mm7|chr1 (91030145-91030266) |
|
191-312, gnl|monDom2|scaffold_184 (944081-943936) |
|
191-312, gnl|oryCun1|scaffold_190321 (4373-4228) |
|
191-312, gnl|panTro1|chr13 (129407308-129407453) |
|
191-312, gnl|rheMac2|chr12 (101632504-101632649) |
|
191-312, gnl|rn3|chr9 (90556998-90557143) |
|
191-312, gnl|tetNig1|chr17 (1028363-1028232) |
| |
|
495-1330, gnl|bosTau2|chr3 (84280421-84281276) |
|
495-1330, gnl|Hg17|chr2 (238470063-238470951) |
|
495-1330, gnl|Mm7|chr1 (91035810-91036667) |
|
che (0.545256) |
|
hlv (0.417769) |
|
cki (0.330469) |
|
sme (0.305437) |
|
ldo (0.291008) |
|
hyp (0.285673) |
|
cst (0.280073) |
|
nms (0.213858) |
|
hea (0.204499) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
ill (0.175593) |
|
ton (0.1755) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cut (0.169924) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
fat (0.147427) |
|
spl (0.143184) |
|
nca (0.136874) |
|
pla (0.133672) |
|
thg (0.126791) |
|
bla (0.124347) |
|
che (0.545256) |
|
hlv (0.417769) |
|
cki (0.330469) |
|
sme (0.305437) |
|
ldo (0.291008) |
|
hyp (0.285673) |
|
cst (0.280073) |
|
nms (0.213858) |
|
hea (0.204499) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
ill (0.175593) |
|
ton (0.1755) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cut (0.169924) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
fat (0.147427) |
|
spl (0.143184) |
|
nca (0.136874) |
|
pla (0.133672) |
|
thg (0.126791) |
|
bla (0.124347) |
