Non-Coding RNA Search

Ss1.1-Mixn-0018o23.5

Sequence:


               
               TCCAGGCACCTTCGTGGGCACCACCGAGCCCGCCTCCCCGCCCCTCAGCAGCACCTCACC
CACCACCACAGCTGCCACCATGCCCGTAGGGCCCTCGGGGGCTGGCCTGGCCCCTCCTGG
GGAGGCCGCTCTCCGCCTGGAAGAGGTGGCTCCTCCCGCCAGCGGCACCCGGAAGGCCCG
GGTGCTCTACGACTACGAGGCGGCCGACAGCAGTGAGCTGGCCCTGCTGGCTGACGAGCT
CATCACTGTCTACAGCCTGCCCGGCATGGACCCCGACTGGCTCATTGGCGAGAGAGGCAA
CAAGAAGGGCAAGGTCCCTGTCACCTACTTGGAACTGCTCAGCTAAGCGGGCCTCCTCCT
GGGCCTGCCCTTTCTGGCCTGGGCAGGAGAGGACGGGTGCGACCCCGCCACTTGTCTCGT
CTGTTGGTGACCCAGCTGCTCAGGGTGGGGAGAGCTACCCCACCCCGTCCCGCCCCCGGG
CGTCTGGCTGCGAGGGGCCCCAGAGGCTGAATGATCCCGGCCCCTCCCCCAGCCCTGCTT
CTGACCTGGTTCCAGAGCCCCCCCAACCTGCCTGCGTCCCTGAGCGCCCCAGCCTGGCCG
GCTCCTGCTGAGGAGGGGGTGCTGGCTGCAGCAGCGGCGGCCCTCAGCTCCCAGGCCCCC
GGGGTTCCGTGCAGACGGCCTGAGGAAGCCGTGGGGTGCGGGCTTGGCAAGACAGCGCCT
GCCTTTTCGTTGCCAAAAGCAGCCGAGGGGGAAAGGCAGGCAGGTAGGTCTGTGGGCAGC
AGGCCCGGGGAGCGGGTGCTGTCCCCTCTGGCTGAGCCCGGGCAGAGGGGAGCCCTGCTG
GAGAGGCGGGGCTGGGCCGCAGCGGCATCTCCCCGGTGCTACCCTCCCCGCCCAGCGCAA
GCCAAGTGTGGCGGCTGCAGCCTGCCCCTCTCTGCACTCACTTTTTAACTGATCTTTTTA
CTCTGCTGTCTGCTTGCTCTCTAGCCAGTGACGCATAATAAACCATCCTCCGTGTGCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGGCACCTTCGTGGGCACCACCGAGCCCGCCTCCCCGCCCCTCAGCAGCACCTCACC
CACCACCACAGCTGCCACCATGCCCGTAGGGCCCTCGGGGGCTGGCCTGGCCCCTCCTGG
GGAGGCCGCTCTCCGCCTGGAAGAGGTGGCTCCTCCCGCCAGCGGCACCCGGAAGGCCCG
GGTGCTCTACGACTACGAGGCGGCCGACAGCAGTGAGCTGGCCCTGCTGGCTGACGAGCT
CATCACTGTCTACAGCCTGCCCGGCATGGACCCCGACTGGCTCATTGGCGAGAGAGGCAA
CAAGAAGGGCAAGGTCCCTGTCACCTACTTGGAACTGCTCAGCTAAGCGGGCCTCCTCCT
GGGCCTGCCCTTTCTGGCCTGGGCAGGAGAGGACGGGTGCGACCCCGCCACTTGTCTCGT
CTGTTGGTGACCCAGCTGCTCAGGGTGGGGAGAGCTACCCCACCCCGTCCCGCCCCCGGG
CGTCTGGCTGCGAGGGGCCCCAGAGGCTGAATGATCCCGGCCCCTCCCCCAGCCCTGCTT
CTGACCTGGTTCCAGAGCCCCCCCAACCTGCCTGCGTCCCTGAGCGCCCCAGCCTGGCCG
GCTCCTGCTGAGGAGGGGGTGCTGGCTGCAGCAGCGGCGGCCCTCAGCTCCCAGGCCCCC
GGGGTTCCGTGCAGACGGCCTGAGGAAGCCGTGGGGTGCGGGCTTGGCAAGACAGCGCCT
GCCTTTTCGTTGCCAAAAGCAGCCGAGGGGGAAAGGCAGGCAGGTAGGTCTGTGGGCAGC
AGGCCCGGGGAGCGGGTGCTGTCCCCTCTGGCTGAGCCCGGGCAGAGGGGAGCCCTGCTG
GAGAGGCGGGGCTGGGCCGCAGCGGCATCTCCCCGGTGCTACCCTCCCCGCCCAGCGCAA
GCCAAGTGTGGCGGCTGCAGCCTGCCCCTCTCTGCACTCACTTTTTAACTGATCTTTTTA
CTCTGCTGTCTGCTTGCTCTCTAGCCAGTGACGCATAATAAACCATCCTCCGTGTGCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-161, - strand, RNAz p=0.723003

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-161, - strand, RNAz p=0.723003

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-238, gnl|bosTau2|chr11 (78811604-78811368)
               

               
               2-238, gnl|Hg17|chr9 (128851175-128850939)
               

               
               2-238, gnl|Mm7|chr2 (30353246-30353010)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-238, gnl|bosTau2|chr11 (78811604-78811368)
               

               
               2-238, gnl|Hg17|chr9 (128851175-128850939)
               

               
               2-238, gnl|Mm7|chr2 (30353246-30353010)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cbr (0.127975)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cbr (0.127975)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	2-238, gnl\|bosTau2\|chr11 (78811604-78811368)
	2-238, gnl\|Hg17\|chr9 (128851175-128850939)
	2-238, gnl\|Mm7\|chr2 (30353246-30353010)

	fli (0.202881)
	fcc (0.197785)
	nje (0.16592)
	nco (0.161734)
	cbr (0.127975)
	med (0.116252)
	eje (0.0988338)