Ss1.1-Mixn-0019a23.5
|
ATTGAGAAGCACACAGTCTGAGTTACCCATTCTGTGGTCAGCGCGATGCCCAAGGCCAAG
GGGAAGACCCGGAGGCAGAAGTTCGGTTACAATGTTAACCGGAAGCGTCTGAACCGAAAT
GCTCGACGGAAGGCAGCGCCGCGGATCCAGTGCTCCCACATCCGACATGCCTGGGACCAG
ACCAAATCGGTGCGGCAGAACCTGGCCGAGATGGGTTTGGCTATGGACCCCAACAGGGCG
GTGCCCCTTATTAAGAGAAAGGTAAAAGCCATGGAGGTGGACAGAGAGGAGAGGCCTAAG
GAGCTTGTGAGGAAGCCTTATGTGCTCAATGACCTAGAGGCAGAAGCCAGCCTTCCAGAA
AAGAAAGGAAATACGCTGTCTCGGGACCTCATTGACTATGTTCGCTATATGGTGGAGAAC
CATGGAGAGGACTATAAGGCTATGGCCCGGGACGAGAAGAATTACTATCAAGATACCCCA
AAACAGATTCGAAATAAGATCAACGTCTATAAGCGTTTTTATCCAGCGGACTGGCAAGCC
TTTGTTGATTCTTTGGAGAAGAATAAGATGGAAGTTGATTGACTGGTTTATGCCTGCCCC
ACGTTGAGGCTTCCTTCTGGACCAGAGAAGCTGGAGCCAGGATTTAAGGCAAGGAGGGGT
ATGCAGCTCCAGATGAGGCTGACCAGACCCCCTGGGATCAAAAGGTTATATGCACACATA
AACACATGCAATCTTTCTCACACTTTGCTTTGGGGAAGGTACTGTCTCCCGGAGGCTCCG
ATTTTGTTCTTCTGGGGGCTCTGGGAAAAGCCAGAACTTGCTGTTCTCAAGAGTGGGTAG
TTGGTTGCATATAGTCTATATACAATAAAATACTCTATTTTAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTGAGAAGCACACAGTCTGAGTTACCCATTCTGTGGTCAGCGCGATGCCCAAGGCCAAG
GGGAAGACCCGGAGGCAGAAGTTCGGTTACAATGTTAACCGGAAGCGTCTGAACCGAAAT
GCTCGACGGAAGGCAGCGCCGCGGATCCAGTGCTCCCACATCCGACATGCCTGGGACCAG
ACCAAATCGGTGCGGCAGAACCTGGCCGAGATGGGTTTGGCTATGGACCCCAACAGGGCG
GTGCCCCTTATTAAGAGAAAGGTAAAAGCCATGGAGGTGGACAGAGAGGAGAGGCCTAAG
GAGCTTGTGAGGAAGCCTTATGTGCTCAATGACCTAGAGGCAGAAGCCAGCCTTCCAGAA
AAGAAAGGAAATACGCTGTCTCGGGACCTCATTGACTATGTTCGCTATATGGTGGAGAAC
CATGGAGAGGACTATAAGGCTATGGCCCGGGACGAGAAGAATTACTATCAAGATACCCCA
AAACAGATTCGAAATAAGATCAACGTCTATAAGCGTTTTTATCCAGCGGACTGGCAAGCC
TTTGTTGATTCTTTGGAGAAGAATAAGATGGAAGTTGATTGACTGGTTTATGCCTGCCCC
ACGTTGAGGCTTCCTTCTGGACCAGAGAAGCTGGAGCCAGGATTTAAGGCAAGGAGGGGT
ATGCAGCTCCAGATGAGGCTGACCAGACCCCCTGGGATCAAAAGGTTATATGCACACATA
AACACATGCAATCTTTCTCACACTTTGCTTTGGGGAAGGTACTGTCTCCCGGAGGCTCCG
ATTTTGTTCTTCTGGGGGCTCTGGGAAAAGCCAGAACTTGCTGTTCTCAAGAGTGGGTAG
TTGGTTGCATATAGTCTATATACAATAAAATACTCTATTTTAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
3-152, gnl|bosTau2|chr7 (25984407-25984261) |
|
3-152, gnl|canFam2|chr4 (40131627-40131487) |
|
3-152, gnl|dasNov1|scaffold_12920 (12698-12535) |
|
3-152, gnl|echTel1|scaffold_322816 (8064-7932) |
|
3-152, gnl|galGal2|chr13 (9400694-9400556) |
|
3-152, gnl|hg17|chr5 (175748007-175748148) |
|
3-152, gnl|Hg17|chr5 (175748189-175748040) |
|
3-152, gnl|mm7|chr13 (53674100-53674235) |
|
3-152, gnl|Mm7|chr13 (53674281-53674127) |
|
3-152, gnl|monDom2|scaffold_6 (18856364-18856223) |
|
3-152, gnl|oryCun1|scaffold_201790 (52305-52212) |
|
3-152, gnl|panTro1|chr4 (183199366-183199507) |
|
3-152, gnl|rheMac2|chr6 (172860283-172860424) |
|
3-152, gnl|rn3|chr17 (16085153-16085018) |
| |
|
437-881, gnl|bosTau2|chr7 (25980086-25979654) |
|
437-881, gnl|Hg17|chr5 (175743983-175743557) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-152, gnl|bosTau2|chr7 (25984407-25984261) |
|
3-152, gnl|canFam2|chr4 (40131627-40131487) |
|
3-152, gnl|dasNov1|scaffold_12920 (12698-12535) |
|
3-152, gnl|echTel1|scaffold_322816 (8064-7932) |
|
3-152, gnl|galGal2|chr13 (9400694-9400556) |
|
3-152, gnl|hg17|chr5 (175748007-175748148) |
|
3-152, gnl|Hg17|chr5 (175748189-175748040) |
|
3-152, gnl|mm7|chr13 (53674100-53674235) |
|
3-152, gnl|Mm7|chr13 (53674281-53674127) |
|
3-152, gnl|monDom2|scaffold_6 (18856364-18856223) |
|
3-152, gnl|oryCun1|scaffold_201790 (52305-52212) |
|
3-152, gnl|panTro1|chr4 (183199366-183199507) |
|
3-152, gnl|rheMac2|chr6 (172860283-172860424) |
|
3-152, gnl|rn3|chr17 (16085153-16085018) |
| |
|
437-881, gnl|bosTau2|chr7 (25980086-25979654) |
|
437-881, gnl|Hg17|chr5 (175743983-175743557) |
|
spl (0.429553) |
|
che (0.272628) |
|
ssp (0.271039) |
|
pla (0.267344) |
|
pgl (0.236967) |
|
nms (0.213858) |
|
nep (0.183925) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cki (0.165235) |
|
csp (0.161186) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
ste (0.135208) |
|
ova (0.129132) |
|
sug (0.127291) |
|
cly (0.120642) |
|
jca (0.11396) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
spl (0.429553) |
|
che (0.272628) |
|
ssp (0.271039) |
|
pla (0.267344) |
|
pgl (0.236967) |
|
nms (0.213858) |
|
nep (0.183925) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cki (0.165235) |
|
csp (0.161186) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
ste (0.135208) |
|
ova (0.129132) |
|
sug (0.127291) |
|
cly (0.120642) |
|
jca (0.11396) |
|
cty (0.10408) |
|
eje (0.0988338) |
