Ss1.1-Mixn-0019c19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACTGACAGAGGGCAACGTGGCCACTTTCAACTACACAGGCCAGCGGGGAGCTGTGGGG CGCGCTTCCTGGCTGTACAAGGTGAGTTGCAGGAGGAAACTGGAGACCCCGTGGAACAGT GCAGGGGTTGGTGGGGAGGGGGCTCGTGCACCTGAAATGACCCAGTGCCTGGGTCTCCCT TCCCCCAGCATGTCTTCCCCTTCTCTTTGATTCGCTATGATGTCACCACAGGGGAGCCGG TTCGGAATACCCGGGGGCACTGTGTGGCCACATCTCCAGGTGAGCCAGGGCTGCTGGTGG CCCCTGTGAGCCAGCAGTCGCCGTTCCTGGGCTACGCTGGGGGGCCAGAGCTGGCCCAGG GAAAGCTGCTGAAGGATGTCTTCCGGCCTGGGGATATTTTCTTCAACACCGGGGACCTCC TGGTTTGCGACGACCAAGGCTTTCTTCGCTTCCACGACCGTACTGGAGACACCTTCAGGT GGAAGGGGGAGAATGTGGCCACGACCGAGGTGGCGGAGGCCCTGGAAGCCCTGCATTTTC TTCAGGAGGTGAACGTCTATGGAGTCGCTGTGCCAGGGCACGAAGGCAGGGCTGGGATGG CAGCCCTGGTTCTGCGTCCCCCACACTCTTTGGACCTCGTGCAGCTCTACACCCACGTTT CTGAGAACTTGCCACCTTATGCCCAGCCTCGATTCCTAAGGCTCCAGGAGTCTCTGGCCA CCACAGAGACCTTCAAGCAGCAGAAGGTTCGGATGGCAAAGGAGGGCTTTGACCCAAGCA CGCTGTCTGACCCACTCTACATTCTGGACCAGGCCGGGGGTGCCTACCTGCCCCTCACAC CTGCTCGGTACAGTGCCCTCCTGGCCGGGGACCTGCGCATCTGAGGGCCCCCACACCAGC ACGCCTGAGGGAGGGACCTTGTCGGGGGAGGGGTATCGCAGGTGCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACTGACAGAGGGCAACGTGGCCACTTTCAACTACACAGGCCAGCGGGGAGCTGTGGGG CGCGCTTCCTGGCTGTACAAGGTGAGTTGCAGGAGGAAACTGGAGACCCCGTGGAACAGT GCAGGGGTTGGTGGGGAGGGGGCTCGTGCACCTGAAATGACCCAGTGCCTGGGTCTCCCT TCCCCCAGCATGTCTTCCCCTTCTCTTTGATTCGCTATGATGTCACCACAGGGGAGCCGG TTCGGAATACCCGGGGGCACTGTGTGGCCACATCTCCAGGTGAGCCAGGGCTGCTGGTGG CCCCTGTGAGCCAGCAGTCGCCGTTCCTGGGCTACGCTGGGGGGCCAGAGCTGGCCCAGG GAAAGCTGCTGAAGGATGTCTTCCGGCCTGGGGATATTTTCTTCAACACCGGGGACCTCC TGGTTTGCGACGACCAAGGCTTTCTTCGCTTCCACGACCGTACTGGAGACACCTTCAGGT GGAAGGGGGAGAATGTGGCCACGACCGAGGTGGCGGAGGCCCTGGAAGCCCTGCATTTTC TTCAGGAGGTGAACGTCTATGGAGTCGCTGTGCCAGGGCACGAAGGCAGGGCTGGGATGG CAGCCCTGGTTCTGCGTCCCCCACACTCTTTGGACCTCGTGCAGCTCTACACCCACGTTT CTGAGAACTTGCCACCTTATGCCCAGCCTCGATTCCTAAGGCTCCAGGAGTCTCTGGCCA CCACAGAGACCTTCAAGCAGCAGAAGGTTCGGATGGCAAAGGAGGGCTTTGACCCAAGCA CGCTGTCTGACCCACTCTACATTCTGGACCAGGCCGGGGGTGCCTACCTGCCCCTCACAC CTGCTCGGTACAGTGCCCTCCTGGCCGGGGACCTGCGCATCTGAGGGCCCCCACACCAGC ACGCCTGAGGGAGGGACCTTGTCGGGGGAGGGGTATCGCAGGTGCATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 80-276, + strand, RNAz p=0.938204 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-276, + strand, RNAz p=0.938204 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AJ577572, + | |
| 5' of CR606981, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-281, gnl|bosTau2|chr3 (7996789-7997072) | |
| 1-281, gnl|Hg17|chr1 (150563824-150564104) | |
| 1-281, gnl|Mm7|chr3 (90518070-90517797) | |
| 476-602, gnl|bosTau2|chr3 (7997608-7997732) | |
| 476-602, gnl|canFam2|chr7 (46296810-46296621) | |
| 476-602, gnl|danRer3|chr7 (20444050-20444240) | |
| 476-602, gnl|dasNov1|scaffold_143133 (3281-3068) | |
| 476-602, gnl|echTel1|scaffold_297408 (8245-8459) | |
| 476-602, gnl|fr1|chrUn (238896376-238896524) | |
| 476-602, gnl|galGal2|chrUn (145171075-145171260) | |
| 476-602, gnl|hg17|chr1 (150564574-150564779) | |
| 476-602, gnl|Hg17|chr1 (150564660-150564789) | |
| 476-602, gnl|loxAfr1|scaffold_2219 (112258-112478) | |
| 476-602, gnl|mm7|chr3 (90517391-90517198) | |
| 476-602, gnl|Mm7|chr3 (90517315-90517191) | |
| 476-602, gnl|monDom2|scaffold_59 (4295345-4295138) | |
| 476-602, gnl|oryCun1|scaffold_191558 (2473-2301) | |
| 476-602, gnl|panTro1|chr1 (132544516-132544721) | |
| 476-602, gnl|rheMac2|chr1 (132292209-132292424) | |
| 476-602, gnl|rn3|chr2 (182595432-182595233) | |
| 476-602, gnl|tetNig1|chrUn_random (47275250-47275381) | |
| 704-925, gnl|bosTau2|chr3 (7998231-7998452) | |
| 704-925, gnl|canFam2|chr7 (46296158-46295960) | |
| 704-925, gnl|danRer3|chr7 (20446936-20447119) | |
| 704-925, gnl|dasNov1|scaffold_143133 (2518-2320) | |
| 704-925, gnl|echTel1|scaffold_278594 (42626-42415) | |
| 704-925, gnl|fr1|chrUn (238896978-238897173) | |
| 704-925, gnl|galGal2|chrUn (145172493-145172699) | |
| 704-925, gnl|hg17|chr1 (150565363-150565561) | |
| 704-925, gnl|Hg17|chr1 (150565371-150565593) | |
| 704-925, gnl|loxAfr1|scaffold_2219 (113050-113249) | |
| 704-925, gnl|mm7|chr3 (90516282-90516086) | |
| 704-925, gnl|Mm7|chr3 (90516272-90516061) | |
| 704-925, gnl|monDom2|scaffold_59 (4294020-4293820) | |
| 704-925, gnl|oryCun1|scaffold_191558 (1888-1688) | |
| 704-925, gnl|panTro1|chr1 (132545304-132545502) | |
| 704-925, gnl|rn3|chr2 (182594401-182594205) | |
| 704-925, gnl|tetNig1|chrUn_random (47275668-47275858) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-281, gnl|bosTau2|chr3 (7996789-7997072) | |
| 1-281, gnl|Hg17|chr1 (150563824-150564104) | |
| 1-281, gnl|Mm7|chr3 (90518070-90517797) | |
| 476-602, gnl|bosTau2|chr3 (7997608-7997732) | |
| 476-602, gnl|canFam2|chr7 (46296810-46296621) | |
| 476-602, gnl|danRer3|chr7 (20444050-20444240) | |
| 476-602, gnl|dasNov1|scaffold_143133 (3281-3068) | |
| 476-602, gnl|echTel1|scaffold_297408 (8245-8459) | |
| 476-602, gnl|fr1|chrUn (238896376-238896524) | |
| 476-602, gnl|galGal2|chrUn (145171075-145171260) | |
| 476-602, gnl|hg17|chr1 (150564574-150564779) | |
| 476-602, gnl|Hg17|chr1 (150564660-150564789) | |
| 476-602, gnl|loxAfr1|scaffold_2219 (112258-112478) | |
| 476-602, gnl|mm7|chr3 (90517391-90517198) | |
| 476-602, gnl|Mm7|chr3 (90517315-90517191) | |
| 476-602, gnl|monDom2|scaffold_59 (4295345-4295138) | |
| 476-602, gnl|oryCun1|scaffold_191558 (2473-2301) | |
| 476-602, gnl|panTro1|chr1 (132544516-132544721) | |
| 476-602, gnl|rheMac2|chr1 (132292209-132292424) | |
| 476-602, gnl|rn3|chr2 (182595432-182595233) | |
| 476-602, gnl|tetNig1|chrUn_random (47275250-47275381) | |
| 704-925, gnl|bosTau2|chr3 (7998231-7998452) | |
| 704-925, gnl|canFam2|chr7 (46296158-46295960) | |
| 704-925, gnl|danRer3|chr7 (20446936-20447119) | |
| 704-925, gnl|dasNov1|scaffold_143133 (2518-2320) | |
| 704-925, gnl|echTel1|scaffold_278594 (42626-42415) | |
| 704-925, gnl|fr1|chrUn (238896978-238897173) | |
| 704-925, gnl|galGal2|chrUn (145172493-145172699) | |
| 704-925, gnl|hg17|chr1 (150565363-150565561) | |
| 704-925, gnl|Hg17|chr1 (150565371-150565593) | |
| 704-925, gnl|loxAfr1|scaffold_2219 (113050-113249) | |
| 704-925, gnl|mm7|chr3 (90516282-90516086) | |
| 704-925, gnl|Mm7|chr3 (90516272-90516061) | |
| 704-925, gnl|monDom2|scaffold_59 (4294020-4293820) | |
| 704-925, gnl|oryCun1|scaffold_191558 (1888-1688) | |
| 704-925, gnl|panTro1|chr1 (132545304-132545502) | |
| 704-925, gnl|rn3|chr2 (182594401-182594205) | |
| 704-925, gnl|tetNig1|chrUn_random (47275668-47275858) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) |